View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9423_low_6 (Length: 233)
Name: NF9423_low_6
Description: NF9423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9423_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 31306341 - 31306549
Alignment:
| Q |
13 |
agcacagacatattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttccga |
112 |
Q |
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| T |
31306341 |
agcacagacatattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttccga |
31306440 |
T |
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| Q |
113 |
agggagttagcatcctgcacaggagctctgcagacatctgttagccaacacatggctaaggagcagcagcaagtaagtttattcaatatatctttccttg |
212 |
Q |
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| T |
31306441 |
agggagttagcatcctgcacaggagctctgcagacatctgttagccaacacatggctaaggagcagcagcaagtaagtttattcaatatatctttccttg |
31306540 |
T |
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| Q |
213 |
atgtccatc |
221 |
Q |
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| T |
31306541 |
atttccatc |
31306549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 43982629 - 43982790
Alignment:
| Q |
13 |
agcacagacatattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttccga |
112 |
Q |
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| T |
43982629 |
agcacaaacttattctcttgagcacaagggtgaaagcaatctttttgatcatctatttgagctcttaaattcttccaccaagaatgatgagggttttcca |
43982728 |
T |
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| Q |
113 |
agggagttagcatcctgcacaggagctctgcagacatctgttagccaacacatggctaagga |
174 |
Q |
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| T |
43982729 |
agagaattggcatcttgcacaggagctttacagacatcagttagtcaacacctggcaaagga |
43982790 |
T |
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