View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9423_low_9 (Length: 206)
Name: NF9423_low_9
Description: NF9423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9423_low_9 |
 | |
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| [»] chr7 (2 HSPs) |
| |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
| | |
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| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
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| [»] scaffold0304 (2 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0897 (1 HSPs) |
| | |
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| [»] scaffold0282 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 14329097 - 14328906
Alignment:
| Q |
15 |
agagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcat |
114 |
Q |
| |
|
||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14329097 |
agagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcat |
14328998 |
T |
|
| Q |
115 |
ccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatgtga |
206 |
Q |
| |
|
|||| |||||||||||||| |||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14328997 |
ccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtga |
14328906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 18166702 - 18166544
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
144 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| |||||||||||||| ||| | ||||| | ||||||| |
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|
| T |
18166702 |
gtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgcttgacgg |
18166603 |
T |
|
| Q |
145 |
tagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
203 |
Q |
| |
|
|||| || || |||||| || |||||||| || || || ||||||||||| |||||| |
|
|
| T |
18166602 |
taggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
18166544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 24954779 - 24954969
Alignment:
| Q |
15 |
agagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcat |
114 |
Q |
| |
|
||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24954779 |
agagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcat |
24954878 |
T |
|
| Q |
115 |
ccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatgtg |
205 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24954879 |
ccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtg |
24954969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 23621526 - 23621371
Alignment:
| Q |
48 |
tcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtag |
147 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| |||||||||||||||||| | ||||| | ||| ||||||| |
|
|
| T |
23621526 |
tcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcattcctaagcaaacgtttaacggtag |
23621427 |
T |
|
| Q |
148 |
ggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
203 |
Q |
| |
|
| || || |||||| ||||||||||| || || || |||||||| || |||||| |
|
|
| T |
23621426 |
gaatgcatggctcaatatctagcatgaattgagtgcatctcaaaatacaaaacatg |
23621371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 23195925 - 23195767
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
144 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| ||||||||||||| ||| | ||||| | ||||||| |
|
|
| T |
23195925 |
gtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgttcctaagcaaacacttgacgg |
23195826 |
T |
|
| Q |
145 |
tagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
203 |
Q |
| |
|
|||| || || |||||| ||| |||||||| || || || ||||||||||| |||||| |
|
|
| T |
23195825 |
taggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgcaaaacatg |
23195767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 22643436 - 22643584
Alignment:
| Q |
55 |
tgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggataca |
154 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||| |||||||||||||| ||||||||||| || ||| | ||||| | ||||| |||| || || |
|
|
| T |
22643436 |
tgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcctaagcaaacgcttgacaataggaatgca |
22643535 |
T |
|
| Q |
155 |
gggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
203 |
Q |
| |
|
|||||| || |||||||| || || || ||||||||||| |||||| |
|
|
| T |
22643536 |
tggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
22643584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 14688566 - 14688375
Alignment:
| Q |
15 |
agagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcat |
114 |
Q |
| |
|
|||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||||||||| |
|
|
| T |
14688566 |
agagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagccagcat |
14688467 |
T |
|
| Q |
115 |
ccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatgtga |
206 |
Q |
| |
|
|||| |||||||||| ||| |||| || ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14688466 |
ccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtga |
14688375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 10787227 - 10787418
Alignment:
| Q |
15 |
agagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcat |
114 |
Q |
| |
|
||||||||||||||| |||||| |||| | |||| || ||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
10787227 |
agagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgt |
10787326 |
T |
|
| Q |
115 |
ccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatgtga |
206 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10787327 |
ccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtga |
10787418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 7360568 - 7360378
Alignment:
| Q |
15 |
agagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcat |
114 |
Q |
| |
|
|||||| |||||||| |||||| | ||| | ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7360568 |
agagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcat |
7360469 |
T |
|
| Q |
115 |
ccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatgtg |
205 |
Q |
| |
|
|||| |||||||||| || |||| || |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7360468 |
ccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtg |
7360378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 10158039 - 10158120
Alignment:
| Q |
46 |
tatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattctt |
127 |
Q |
| |
|
||||||| | |||||||||||||||||||| | |||||| ||||| || ||| |||| |||||| |||||||||||||||| |
|
|
| T |
10158039 |
tatcaggagagataccgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagccatcatccatagcattctt |
10158120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 41375500 - 41375357
Alignment:
| Q |
59 |
accgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggc |
158 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
41375500 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattcttcagcaagccttggacggtaggaatgcagggc |
41375401 |
T |
|
| Q |
159 |
tcagggtctagcatgaactgggtacacctcaaaatgcagaacat |
202 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375400 |
tcagggtccagcatgaactgggtacacctcaaaatgcagaacat |
41375357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 22081044 - 22081231
Alignment:
| Q |
15 |
agagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcat |
114 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
22081044 |
agagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcat |
22081143 |
T |
|
| Q |
115 |
ccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacat |
202 |
Q |
| |
|
|||| || ||||| || || |||||||||||||| || || |||||| || | ||| || |||||||| ||||||||||| ||||| |
|
|
| T |
22081144 |
ccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacat |
22081231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 22799846 - 22799785
Alignment:
| Q |
63 |
tcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcatt |
124 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
22799846 |
tcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 1730045 - 1730232
Alignment:
| Q |
15 |
agagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcat |
114 |
Q |
| |
|
||||||||||||||| |||||| |||| | |||| || ||| | ||| |||| ||||||| ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
1730045 |
agagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagccagcgt |
1730144 |
T |
|
| Q |
115 |
ccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacat |
202 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1730145 |
ccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacat |
1730232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 22338649 - 22338584
Alignment:
| Q |
60 |
ccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattc |
125 |
Q |
| |
|
||||| || |||||||| | ||||| ||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
22338649 |
ccgtcgagtgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 74537 - 74694
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
144 |
Q |
| |
|
||||||||||||||||||||||| || |||| | |||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
74537 |
gtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcttaagcaaatgcttgacgg |
74636 |
T |
|
| Q |
145 |
tagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacat |
202 |
Q |
| |
|
|||| || || |||||| ||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
74637 |
taggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgcaaaacat |
74694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 39013 - 39116
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
144 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| |||||||||||||| ||| | ||||| | |||||||| |
|
|
| T |
39013 |
gtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttgacgg |
39112 |
T |
|
| Q |
145 |
tagg |
148 |
Q |
| |
|
|||| |
|
|
| T |
39113 |
tagg |
39116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 32725 - 32622
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
144 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| |||||||||||||| ||| | ||||| | |||||||| |
|
|
| T |
32725 |
gtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttgacgg |
32626 |
T |
|
| Q |
145 |
tagg |
148 |
Q |
| |
|
|||| |
|
|
| T |
32625 |
tagg |
32622 |
T |
|
Back To:
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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 13284448 - 13284332
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
144 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | |||||| ||||| |||||| ||||||||||||| |||||||| ||| | ||||| | ||||||| |
|
|
| T |
13284448 |
gtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcgttcctaagcaaacgcttgacgg |
13284349 |
T |
|
| Q |
145 |
tagggatacagggctca |
161 |
Q |
| |
|
|||| || || |||||| |
|
|
| T |
13284348 |
taggaatgcatggctca |
13284332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 14562304 - 14562190
Alignment:
| Q |
47 |
atcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggta |
146 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| | |||||| ||||| |||||| ||||||||||||| |||||||||||| | ||||| | ||||||||| |
|
|
| T |
14562304 |
atcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggta |
14562205 |
T |
|
| Q |
147 |
gggatacagggctca |
161 |
Q |
| |
|
|| || || |||||| |
|
|
| T |
14562204 |
ggaatgcatggctca |
14562190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 14742018 - 14741960
Alignment:
| Q |
63 |
tcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagc |
121 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || ||| |||||||||||||||||||||| |
|
|
| T |
14742018 |
tcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 13668 - 13782
Alignment:
| Q |
47 |
atcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggta |
146 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| | |||||| ||||| |||||| ||||||||||||| |||||||||||| | ||||| | ||||||||| |
|
|
| T |
13668 |
atcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggta |
13767 |
T |
|
| Q |
147 |
gggatacagggctca |
161 |
Q |
| |
|
|| || || |||||| |
|
|
| T |
13768 |
ggaatgcatggctca |
13782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 19507 - 19584
Alignment:
| Q |
47 |
atcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcatt |
124 |
Q |
| |
|
|||||| ||||||||||||| |||| |||| | |||||| ||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
19507 |
atcaggagtgataccgtcaatcgccatcagaattacatcaaagtaaagagcgctcacagagccagcgtccatagcatt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 28722 - 28880
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
144 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | |||||| ||||| |||||| | ||||||||||| |||||||| ||| | ||||| | ||||||| |
|
|
| T |
28722 |
gtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagcgttcctaagcaaacgcttgacgg |
28821 |
T |
|
| Q |
145 |
tagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
203 |
Q |
| |
|
|||| || || |||||| ||||||||||| || || || |||||||| || |||||| |
|
|
| T |
28822 |
taggaatgcatggctcaacatctagcatgaattgagtgcatctcaaaatacaaaacatg |
28880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 12356 - 12276
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattc |
125 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | ||||| ||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
12356 |
gtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 18107 - 18027
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattc |
125 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | ||||| ||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
18107 |
gtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 36088 - 36203
Alignment:
| Q |
46 |
tatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggt |
145 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||| ||||| |||||| | || || ||||| |||||||||||| | ||||| | |||||| || |
|
|
| T |
36088 |
tatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatagcattcctaagcaaacgtttgacagt |
36187 |
T |
|
| Q |
146 |
agggatacagggctca |
161 |
Q |
| |
|
||| || || |||||| |
|
|
| T |
36188 |
aggaatgcatggctca |
36203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 3919 - 3832
Alignment:
| Q |
45 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagca |
132 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| | |||||| ||||| |||||||||||||| ||||||||||| || ||||| |||| |
|
|
| T |
3919 |
gtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcttaagca |
3832 |
T |
|
Back To:
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Target: scaffold0282 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 2209 - 2148
Alignment:
| Q |
63 |
tcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcatt |
124 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || || ||||||||||||||||||||||||| |
|
|
| T |
2209 |
tcaagcgccctcagcatgacatcaaagtagagcacgctcacagagccagcatccatagcatt |
2148 |
T |
|
Back To:
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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 121823 - 121759
Alignment:
| Q |
71 |
cctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagc |
135 |
Q |
| |
|
|||||| || ||||| || || || ||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
121823 |
cctcagcaggacatcaaaatagagcgcgctcacagagccagcatccatagcattcctaagcaagc |
121759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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