View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9424_high_1 (Length: 464)

Name: NF9424_high_1
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9424_high_1
NF9424_high_1
[»] chr5 (19 HSPs)
chr5 (11-444)||(15812249-15812682)
chr5 (18-444)||(15728593-15729019)
chr5 (51-405)||(10133518-10133875)
chr5 (50-444)||(22909933-22910329)
chr5 (88-362)||(32695642-32695919)
chr5 (75-444)||(27688876-27689248)
chr5 (56-444)||(23248635-23249028)
chr5 (75-430)||(8241616-8241973)
chr5 (47-283)||(28335558-28335796)
chr5 (219-398)||(28443612-28443791)
chr5 (99-444)||(22416211-22416559)
chr5 (75-444)||(27496284-27496653)
chr5 (50-228)||(27949703-27949881)
chr5 (98-224)||(36519644-36519770)
chr5 (50-224)||(31470941-31471115)
chr5 (46-228)||(41615131-41615313)
chr5 (124-205)||(24854687-24854768)
chr5 (315-444)||(28335795-28335924)
chr5 (316-428)||(27949953-27950065)
[»] chr8 (13 HSPs)
chr8 (56-444)||(28285487-28285877)
chr8 (120-444)||(16796002-16796329)
chr8 (99-228)||(41835909-41836038)
chr8 (46-225)||(11458033-11458212)
chr8 (91-223)||(19330084-19330216)
chr8 (91-202)||(24831979-24832090)
chr8 (82-205)||(10524-10647)
chr8 (269-444)||(14194125-14194300)
chr8 (294-444)||(12191373-12191522)
chr8 (294-444)||(12435801-12435950)
chr8 (124-224)||(12573340-12573440)
chr8 (152-220)||(21217790-21217858)
chr8 (171-223)||(21446182-21446234)
[»] chr2 (17 HSPs)
chr2 (51-430)||(37126504-37126885)
chr2 (143-364)||(33946102-33946326)
chr2 (62-345)||(21483839-21484125)
chr2 (147-364)||(25630613-25630833)
chr2 (254-433)||(2734560-2734739)
chr2 (50-228)||(18964517-18964695)
chr2 (123-234)||(15112107-15112218)
chr2 (97-254)||(5937077-5937234)
chr2 (97-228)||(34949730-34949861)
chr2 (123-205)||(5463172-5463254)
chr2 (46-190)||(35096244-35096388)
chr2 (116-227)||(42014863-42014973)
chr2 (270-352)||(42014750-42014832)
chr2 (121-321)||(41255369-41255571)
chr2 (50-173)||(32122259-32122382)
chr2 (161-228)||(32475467-32475534)
chr2 (305-382)||(5462992-5463069)
[»] chr7 (20 HSPs)
chr7 (75-444)||(1905602-1905976)
chr7 (50-433)||(1853513-1853899)
chr7 (46-405)||(19515925-19516295)
chr7 (50-228)||(22203441-22203619)
chr7 (92-224)||(1378654-1378786)
chr7 (97-382)||(33851302-33851590)
chr7 (91-228)||(15031371-15031508)
chr7 (97-228)||(109924-110055)
chr7 (97-228)||(26793221-26793352)
chr7 (91-245)||(18043882-18044036)
chr7 (97-205)||(35583852-35583960)
chr7 (91-226)||(7254162-7254297)
chr7 (134-205)||(29331066-29331137)
chr7 (123-233)||(38256273-38256383)
chr7 (123-233)||(38263848-38263958)
chr7 (123-228)||(37999887-37999992)
chr7 (97-204)||(43748003-43748110)
chr7 (121-228)||(2670064-2670171)
chr7 (302-432)||(1380233-1380363)
chr7 (302-432)||(1386337-1386467)
[»] chr4 (19 HSPs)
chr4 (56-342)||(49606379-49606668)
chr4 (75-444)||(23185821-23186196)
chr4 (99-228)||(11648920-11649049)
chr4 (97-228)||(44109186-44109317)
chr4 (134-228)||(53270656-53270750)
chr4 (82-205)||(55610475-55610598)
chr4 (91-228)||(52918257-52918394)
chr4 (123-323)||(29551903-29552106)
chr4 (123-227)||(38989469-38989573)
chr4 (46-192)||(8909966-8910112)
chr4 (91-205)||(40761184-40761298)
chr4 (123-228)||(40691746-40691851)
chr4 (181-334)||(12692517-12692674)
chr4 (50-165)||(7631070-7631185)
chr4 (47-138)||(34952651-34952742)
chr4 (82-228)||(6369415-6369561)
chr4 (94-183)||(45658276-45658366)
chr4 (118-228)||(37397025-37397130)
chr4 (51-111)||(12692685-12692745)
[»] chr3 (24 HSPs)
chr3 (121-444)||(51327448-51327773)
chr3 (121-444)||(10493326-10493648)
chr3 (46-444)||(12718699-12719100)
chr3 (75-444)||(25213241-25213616)
chr3 (241-444)||(24628829-24629031)
chr3 (149-405)||(27025059-27025318)
chr3 (144-405)||(27036295-27036559)
chr3 (91-382)||(21449271-21449562)
chr3 (82-382)||(9331745-9332048)
chr3 (91-228)||(18877259-18877396)
chr3 (97-228)||(21978656-21978787)
chr3 (97-228)||(22001087-22001218)
chr3 (123-220)||(8485201-8485298)
chr3 (123-228)||(3940215-3940320)
chr3 (97-226)||(44206479-44206608)
chr3 (123-228)||(47373535-47373640)
chr3 (290-433)||(23333481-23333624)
chr3 (82-191)||(41973433-41973542)
chr3 (147-225)||(51135472-51135550)
chr3 (97-185)||(48063458-48063546)
chr3 (97-233)||(49326077-49326213)
chr3 (196-264)||(23333638-23333709)
chr3 (277-333)||(4812130-4812186)
chr3 (290-382)||(41973239-41973331)
[»] scaffold0001 (1 HSPs)
scaffold0001 (95-432)||(425849-426189)
[»] chr1 (23 HSPs)
chr1 (57-405)||(34550331-34550682)
chr1 (46-321)||(28638796-28639074)
chr1 (46-405)||(7563148-7563510)
chr1 (41-430)||(48181122-48181514)
chr1 (50-228)||(30517105-30517283)
chr1 (224-432)||(41367920-41368127)
chr1 (97-205)||(18277751-18277859)
chr1 (97-228)||(22334224-22334355)
chr1 (134-227)||(17384671-17384763)
chr1 (134-254)||(7198772-7198892)
chr1 (142-448)||(11355413-11355722)
chr1 (82-228)||(4852580-4852726)
chr1 (123-382)||(10221853-10222115)
chr1 (82-205)||(39599431-39599554)
chr1 (135-227)||(10311465-10311557)
chr1 (123-254)||(5748592-5748723)
chr1 (118-199)||(35988796-35988877)
chr1 (154-333)||(43074978-43075159)
chr1 (280-355)||(15248432-15248507)
chr1 (305-405)||(30516925-30517025)
chr1 (281-364)||(15499936-15500019)
chr1 (270-323)||(7492894-7492947)
chr1 (105-137)||(15248254-15248286)
[»] scaffold0048 (3 HSPs)
scaffold0048 (46-304)||(54820-55081)
scaffold0048 (138-304)||(86963-87132)
scaffold0048 (354-448)||(86815-86909)
[»] chr6 (13 HSPs)
chr6 (56-364)||(20819684-20819995)
chr6 (97-362)||(19626535-19626800)
chr6 (50-405)||(20386669-20387027)
chr6 (46-228)||(17520915-17521097)
chr6 (46-263)||(25172866-25173086)
chr6 (97-382)||(13038146-13038434)
chr6 (268-444)||(25176451-25176626)
chr6 (278-444)||(17521131-17521296)
chr6 (97-181)||(34950110-34950194)
chr6 (123-205)||(29436172-29436254)
chr6 (268-321)||(32420191-32420244)
chr6 (268-321)||(32426032-32426085)
chr6 (46-170)||(12304071-12304195)
[»] scaffold0210 (1 HSPs)
scaffold0210 (46-444)||(6818-7218)
[»] scaffold0064 (1 HSPs)
scaffold0064 (77-431)||(61586-61942)
[»] scaffold0054 (1 HSPs)
scaffold0054 (97-435)||(17582-17916)
[»] scaffold0127 (1 HSPs)
scaffold0127 (232-405)||(36884-37057)
[»] scaffold0168 (1 HSPs)
scaffold0168 (97-227)||(16728-16858)
[»] scaffold0160 (1 HSPs)
scaffold0160 (283-382)||(7467-7566)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 15812682 - 15812249
Alignment:
Q  11 cagagacaatatggaccctttgatgacattcataccacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagtt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  15812682 cagagacaatatggaccctttgatgacattcataccacagatcagctaaattaatgtcttcatatggtgcgtccaagagtgccctaatctcttcgtagtt 15812583  T
Q  111 cttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaag 210  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15812582 cttgggtcggatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtattgaccaaagatcaag 15812483  T
Q  211 aatatggttctcacgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccc 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  15812482 aatatggttctcacgtcgccgttcataagcttcatccgggtgaaccgcacactcctggctgagtcgatcgatggatgtcgatactgaacaccatccaccc 15812383  T
Q  311 tccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattgg 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  15812382 tccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcaacacagagagggcgacataagtgtgaatcctaaatagatggattgg 15812283  T
Q  411 tttctccccgttgtagtaaactgtaactagcttg 444  Q
    |||||||||||||||||| |||||||||||||||    
T  15812282 tttctccccgttgtagtacactgtaactagcttg 15812249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 15729019 - 15728593
Alignment:
Q  18 aatatggaccctttgatgacattcataccacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggt 117  Q
    ||||||||||||||||||| | |||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15729019 aatatggaccctttgatgagaatcataccacatatgagctaaattaatgtcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttcggt 15728920  T
Q  118 cagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatgg 217  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15728919 cggatcaaacttttatgaatttgttcaacatatatgaccaacgaagcgtctaactcgatcggccctctagtactgtactgaccaaagatcaagaatatgg 15728820  T
Q  218 ttctcacgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgt 317  Q
    ||||||| ||| |||||||  || ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  15728819 ttctcacatcgtcgttcataggcatcatccgggtgaaccgcacactcccggctgagtcgatcgatggatgtcgatactcaacaccatccaccctctgtgt 15728720  T
Q  318 gtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  15728719 gtctctttagttgagttggcggttgattcgatccagctgacccttcaacacggagagggcgacataagtgtgaatcctgaacaaatggattggtttctcc 15728620  T
Q  418 ccgttgtagtaaactgtaactagcttg 444  Q
    |||||||||||||||||| ||||||||    
T  15728619 ccgttgtagtaaactgtagctagcttg 15728593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 51 - 405
Target Start/End: Complemental strand, 10133875 - 10133518
Alignment:
Q  51 atcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatat 150  Q
    |||| ||||| |||| ||||| | ||||| |||||| |||||| | ||||||||||||||| |||| | ||||||||||||||| |||||||||||| ||    
T  10133875 atcagctaaactaatgtcttcgtctggtgtgtccagcagtgccatgatctcttcgtagttcctgggccggatcaaacttttatggatttgttcaacagat 10133776  T
Q  151 ctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgcc---gttcatcagcttcatcc 247  Q
    || |||||| ||| |||||||||||||| ||||| |||||||||||  | ||||||| | || || |||||||||||| |   |||||| ||||||||||    
T  10133775 cttaccaacaaagtgtccaactcgatcgatcctccagtactgtactatcaaaagatcgataacatagttctcacgtcgtcatcgttcatgagcttcatcc 10133676  T
Q  248 gggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcg 347  Q
    || |||||| ||||||||| ||||||||| | ||||||||| ||||||||||| | ||||||||||| |||||| | | ||||||||||||||||||| |    
T  10133675 ggctgaaccacacactcctggctgagtcggttgatggatgtcgatactcaacatcgtccaccctccgcgtgtctttgtggttgagttggcggttgatttg 10133576  T
Q  348 atccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
    |||||||||| |||||| |   |||| || ||||| |||||||||| |||| ||||||    
T  10133575 atccagctgatccttcaacctggagatggtgacatcagtgtgaatcatgaacagatgg 10133518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 50 - 444
Target Start/End: Complemental strand, 22910329 - 22909933
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||| |||| ||||| | |||||||||||  ||||||||||| |||||||||||| | || |  ||||||||||   |||| |||||||||||    
T  22910329 gatcatctaaactaatgtcttcgtgtggtgcgtccattagtgccctaatttcttcgtagttccttggccgaatcaaactttgtcgaatatgttcaacata 22910230  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac---gtcgccgttcatcagcttcatc 246  Q
    | |||||||||||||||  ||||||||| | |||||||||||| | |||||||||||  |||| |||||||||||   |||| ||||||| |||||||||    
T  22910229 tttgaccaacgaagcgtttaactcgatcagccctctagtactgaattgaccaaagatggagaacatggttctcacgtcgtcgtcgttcatgagcttcatc 22910130  T
Q  247 cgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattc 346  Q
    || |||| |||||| ||||  ||||||| | ||||   | || |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||     
T  22910129 cgagtgagccgcactctcccagctgagttggtcgacaaacgtcgatactcaacaccatccaccctccgtgtgtctctgtagttgagttcgaggttgattt 22910030  T
Q  347 gatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    ||| |||||||| ||||| | | ||||||| ||||| | ||||||||||||| | ||||  |||||| ||||| ||||||||||||| | ||||||||    
T  22910029 gattcagctgactcttcaacccggagagggtgacatcattgtgaatcctgaagaaatggggtggttt-tccccattgtagtaaactgcagctagcttg 22909933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 88 - 362
Target Start/End: Original strand, 32695642 - 32695919
Alignment:
Q  88 agtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctag 187  Q
    |||||| | ||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||    
T  32695642 agtgccatgatctcttcgcagttcttgggccagatcaaacttttctgaatttgttcaacagatctgaccaacaaagcgtccaactcgatcggtcctttag 32695741  T
Q  188 tactgtactgaccaaagatcaagaatatggttctcacgtcgccg---ttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatgg 284  Q
    || ||||||||||||||||| |||| | | ||||||||||| ||   ||||| ||||||| |||  ||||||||||| ||     ||||||| |||||||    
T  32695742 tattgtactgaccaaagatcgagaacacgattctcacgtcgtcgtcattcatgagcttcaaccgattgaaccgcacattctcgaatgagtcggtcgatgg 32695841  T
Q  285 atgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgaccctt 362  Q
    | || |||||| |||||| ||||||||||||| || ||| | ||||||||| ||||||||| ||||||| ||||||||    
T  32695842 acgtcgatacttaacaccgtccaccctccgtgcgtgtctgtcgttgagttgacggttgatttgatccagttgaccctt 32695919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 444
Target Start/End: Complemental strand, 27689248 - 27688876
Alignment:
Q  75 tggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcg 174  Q
    ||||| |||||  ||||| || ||||||||||||||| |||| | |||||||||||| ||||||||||||||| ||| |||||| ||||||||||||| |    
T  27689248 tggtgtgtccaccagtgctctgatctcttcgtagttcctgggccggatcaaacttttctgaatttgttcaacaaatcagaccaatgaagcgtccaacttg 27689149  T
Q  175 atcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac---gtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctg 271  Q
    ||||||||| ||||||||||||||||||||||| |||| |||||||||||   || | | || || |||||||||||| || ||||||||||||| |||     
T  27689148 atcggtcctatagtactgtactgaccaaagatcgagaacatggttctcacgttgttgtcctttatgagcttcatccggctggaccgcacactcctggcta 27689049  T
Q  272 agtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacaga 371  Q
    ||||  |||||| |  | ||| ||||||||| |||| |||| |||| ||| | |  ||||||||| |||| ||| |||| |||||| ||||||     ||    
T  27689048 agtcagtcgatgtacatcgatgctcaacaccgtccatcctctgtgtatctatgtgcttgagttggtggtttatttgatcgagctgatccttcaatctgga 27688949  T
Q  372 gagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    ||||| ||||| ||||  |||||| || || |||  ||||||  |||||||||||||||||| | ||||||||    
T  27688948 gagggtgacatgagtgcaaatcctaaacaggtgggatggttttcccccgttgtagtaaactgcagctagcttg 27688876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 56 - 444
Target Start/End: Original strand, 23248635 - 23249028
Alignment:
Q  56 ctaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgac 155  Q
    |||||||||| ||||| | |||||||||||  |||||||| ||||||||||||||  |||| | ||||||| |||  ||||| ||||||||| |||||||    
T  23248635 ctaaattaatctcttcgtctggtgcgtccattagtgccctgatctcttcgtagtttctgggccggatcaaattttgttgaatatgttcaacagatctgac 23248734  T
Q  156 caacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca------cgtcgccgttcatcagcttcatccgg 249  Q
    |||||||| ||||||||||||||  |||||||||||  |||||||||||||  |||| ||||||||||      ||||| ||||||| |||||||||| |    
T  23248735 caacgaagtgtccaactcgatcgaccctctagtactaaactgaccaaagatggagaacatggttctcacgtcgtcgtcgtcgttcatgagcttcatccag 23248834  T
Q  250 gtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgat 349  Q
     |||||||||||||||  ||||||||| ||||   | ||  ||||| |||| ||||||||||  |||||||||| ||||||| ||   |||| ||  |||    
T  23248835 ctgaaccgcacactcccggctgagtcggtcgacaaacgtcaatacttaacaacatccaccctatgtgtgtctctatagttgaattcaaggttaatatgat 23248934  T
Q  350 ccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
     ||| |||| ||||| | | |||| || ||||| |||| |||||||||| ||||||  ||||||| ||||||||||| |||| | | ||||||||    
T  23248935 tcagttgactcttcaacccggagaaggtgacatcagtgggaatcctgaacagatggggtggtttc-ccccgttgtagaaaaccgcagctagcttg 23249028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 75 - 430
Target Start/End: Complemental strand, 8241973 - 8241616
Alignment:
Q  75 tggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcg 174  Q
    ||||||||| || || ||| ||||||||||||||||| |||| || ||||||||||| ||||||||||||||| |||  ||| |||||   |||||||||    
T  8241973 tggtgcgtctagcagagccttaatctcttcgtagttcctgggccatatcaaacttttctgaatttgttcaacagatcatacctacgaactttccaactcg 8241874  T
Q  175 atcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgt---tcatcagcttcatccgggtgaaccgcacactccttgctg 271  Q
    | || |||| |||| | ||| |||||||||||| |||| ||||||||||||||| |||   |||| | |||||||||| ||||| |||||||||  ||||    
T  8241873 accg-tcctttagtgccgtagtgaccaaagatcgagaacatggttctcacgtcgtcgtcgctcatgatcttcatccggctgaactgcacactcccagctg 8241775  T
Q  272 agtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacaga 371  Q
     || |||||||||| || ||||| |||||||||||||| |||  |||||||| |  |||||||| ||||||||| ||||||| ||| |||||| |    |    
T  8241774 ggttgatcgatggacgtcgatacccaacaccatccaccatcctcgtgtctctgtgattgagttgacggttgatttgatccagatgatccttcaacctgta 8241675  T
Q  372 gagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaa 430  Q
    ||||| ||||| |||||||||||| || |  |||  |||||| |||| |||||||||||    
T  8241674 gagggtgacatcagtgtgaatcctaaacatgtggggtggtttttccctgttgtagtaaa 8241616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 28335558 - 28335796
Alignment:
Q  47 acagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaac 146  Q
    ||||||||||||||||||| |||   | ||||||||| ||||||||||| |||||||||||||| ||||| | |||||||||||  ||||||||||||||    
T  28335558 acagatcaactaaattaatgtctctgtgtggtgcgtcaaggagtgccctgatctcttcgtagtttttgggccggatcaaactttcctgaatttgttcaac 28335657  T
Q  147 atatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca---cgtcgccgttcatcagcttc 243  Q
    | |||||||||||||| | |||||||||||| | |||||||||||||| |||| ||||||  |||| ||| ||||||   ||||| ||||||| ||||||    
T  28335658 aaatctgaccaacgaaacatccaactcgatc-gccctctagtactgtattgacaaaagattgagaacatgattctcacgtcgtcgtcgttcatgagcttc 28335756  T
Q  244 atccgggtgaaccgcacactccttgctgagtcgatcgatg 283  Q
    |||||   |||||||||| | |  ||||||||| ||||||    
T  28335757 atccgaccgaaccgcacaataccggctgagtcggtcgatg 28335796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 219 - 398
Target Start/End: Original strand, 28443612 - 28443791
Alignment:
Q  219 tctcacgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtg 318  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||   ||  |||  ||||||||  | ||||||||||| | ||||||||||| |||    
T  28443612 tctcacgtcgtcgttcatgagcttcatccggctgaaccgcacactcccatctaggtcagtcgatggacatcgatactcaacatcgtccaccctccgcgtg 28443711  T
Q  319 tctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaa 398  Q
    ||||| | |||||||||| |||||||| ||||||||||| |||||| | |||||| || ||||| |||||||||||||||    
T  28443712 tctctgtggttgagttggtggttgatttgatccagctgatccttcaacccagagaaggtgacatcagtgtgaatcctgaa 28443791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 444
Target Start/End: Complemental strand, 22416559 - 22416211
Alignment:
Q  99 ctcttcgtagttcttgggtcagatcaaactttta-tgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactg 197  Q
    ||||| ||||||| |||| | ||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  22416559 ctcttagtagttcctgggccggatcaaacttttgctgaatttcttcaacagatctgaccaacgaagcgtccaactcgaccggtcctttagtactgtactg 22416460  T
Q  198 accaaagatcaagaatatggttctcacgtcgcc---gttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatac 294  Q
    |||| |  |  |||| ||||||||||||||  |   |||| | |||||||||||  |||||||||||   || ||||||| | |||||||| ||| ||||    
T  22416459 accacattttgagaacatggttctcacgtcatcttcgttcttgagcttcatccgactgaaccgcacaaatctagctgagttggtcgatggacgtt-atac 22416361  T
Q  295 tcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcc 394  Q
    |||||||||| | || ||| ||| ||| | | ||||| |||  |||||||| |||| || | |||||||| | |  |||| | ||||| ||| ||||||     
T  22416360 tcaacaccattcgccttccttgtatctttgtggttgaattgatggttgatttgatctagttcacccttcaacccgaagagcgtgacatcagtttgaatca 22416261  T
Q  395 tgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    |||| ||||| | ||||||  |||  |||||||||| || | ||||||||    
T  22416260 tgaacagatgaagtggttttcccctattgtagtaaattgcagctagcttg 22416211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 444
Target Start/End: Original strand, 27496284 - 27496653
Alignment:
Q  75 tggtgcgtccaggagtgccctaatctcttcgtagttc-ttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactc 173  Q
    ||||||||||   |||||||| |||||||| |||||| ||||||  |||||||||||  ||||| ||||||||| | |||||||||||||| ||||||||    
T  27496284 tggtgcgtccgttagtgccctgatctcttcttagttccttgggtg-gatcaaactttgttgaatatgttcaacaaacctgaccaacgaagcatccaactc 27496382  T
Q  174 gatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgcc---------gttcatcagcttcatccgggtgaaccgcacactc 264  Q
    |||| | ||| |         ||||||||||||  |||| |||| |||||||||| |         |||||| |||||||||||| |||||||||||| |    
T  27496383 gatctgacctat---------ctgaccaaagatggagaagatggctctcacgtcgtcatcgtcgtcgttcatgagcttcatccggctgaaccgcacaccc 27496473  T
Q  265 cttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttca 364  Q
    |   ||||||||||||| | | || ||||||||||||||| ||||||| |||||||||| |||||||||| | |||||||| |||  ||||| | |||||    
T  27496474 ccgactgagtcgatcgacgaacgtcgatactcaacaccattcaccctctgtgtgtctctgtagttgagttcgaggttgatttgatttagctggctcttca 27496573  T
Q  365 gcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
     | |  |||||| ||||| | ||||||| ||||| | ||||  ||||||| |||||||||| |||| || | ||||||||    
T  27496574 acccgaagagggtgacatcattgtgaattctgaacatatggggtggtttccccccgttgtaataaattgcagctagcttg 27496653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 27949703 - 27949881
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||| ||| |||||| | |||| | ||||| || ||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||| |    
T  27949703 gatcacctaaactaacttcttcctctggtccctccagcagagccctgatctcttcgtagttcttgggtcggatcaaacttttttgaattttttcaacaga 27949802  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| || ||| ||||||||||||||||||| | ||||||| ||| ||||| |||||   |||  |||||||||||||||    
T  27949803 tctaactaactaagcgtccaactcgatcggccatctagtattgtgctgactaaagacatagatcatggttctcacgtcg 27949881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 36519770 - 36519644
Alignment:
Q  98 tctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactg 197  Q
    |||||||||||||| | |||  |||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||    
T  36519770 tctcttcgtagttcctaggttggatcaaacttttctgaatttcttcaacagatttgaccaacgaagcgtccaactcgatcagtcctttagtattgtactg 36519671  T
Q  198 accaaagatcaagaatatggttctcac 224  Q
    |||||| ||| |||| |||||||||||    
T  36519670 accaaatatcgagaacatggttctcac 36519644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 31471115 - 31470941
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||| ||| |||||||| |||| | ||||  ||  |||| ||||||||||||||| |||||| |  |||||||||  ||||||||||| || |    
T  31471115 gatcatctaaactaacttcttcatctggtccctccaacagaaccctgatctcttcgtagttcctgggtcggtgcaaacttttcagaatttgttcagcaga 31471016  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac 224  Q
    ||| | |||||||||||||||||||||||||||||||||  ||| |||||||||||  ||||  |||||||||||    
T  31471015 tctaaacaacgaagcgtccaactcgatcggtcctctagtgttgtgctgaccaaagaaaaagagcatggttctcac 31470941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 41615313 - 41615131
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    |||| |||| ||||| |||||||||||| |||||  || ||||||||||| |||||||||||| || | || | | ||||||| |   |||||||||||     
T  41615313 cacatatcatctaaactaatttcttcatctggtggttcaaggagtgccctgatctcttcgtaggtcctaggccggttcaaactatccagaatttgttcag 41615214  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    || |||| |||||| ||||||||||||||||||||| ||||||| ||| |||||||||||   | || |||||||||||||||    
T  41615213 caaatctaaccaacaaagcgtccaactcgatcggtcatctagtaatgtgctgaccaaagacagaaaacatggttctcacgtcg 41615131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 24854768 - 24854687
Alignment:
Q  124 aaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaaga 205  Q
    ||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  24854768 aaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgctgaccaaaga 24854687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 444
Target Start/End: Original strand, 28335795 - 28335924
Alignment:
Q  315 tgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttc 414  Q
    ||||||||  ||||| ||||| ||||||||| |||||| || ||| |||| | | ||||||| ||||| ||||  ||||||||| ||||||  ||||||     
T  28335795 tgtgtctcagtagtttagttgacggttgatttgatccaactaacctttcaacccggagagggtgacattagtggaaatcctgaacagatggggtggtttt 28335894  T
Q  415 tccccgttgtagtaaactgtaactagcttg 444  Q
     |||||||||||||||||||| ||||||||    
T  28335895 cccccgttgtagtaaactgtagctagcttg 28335924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 428
Target Start/End: Original strand, 27949953 - 27950065
Alignment:
Q  316 gtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttct 415  Q
    |||||||| ||||||||||| ||||||||| ||||||||||| |||||||||| || |||| |||||   || ||||||| || ||||||  ||||||      
T  27949953 gtgtctctgtagttgagttgacggttgatttgatccagctgatccttcagcacggaaagggtgacatcgttgcgaatcctaaacagatggggtggttttc 27950052  T
Q  416 ccccgttgtagta 428  Q
    || ||||||||||    
T  27950053 cctcgttgtagta 27950065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 56 - 444
Target Start/End: Original strand, 28285487 - 28285877
Alignment:
Q  56 ctaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa-catatctga 154  Q
    |||||||||| ||||| ||||||||||  |  |||||||| ||||||||||||||| | ||   |||||||||||| | |||||||  || || ||||||    
T  28285487 ctaaattaatgtcttcctatggtgcgttgaatagtgccctgatctcttcgtagttcctaggcaggatcaaacttttctaaatttgtaaaaacagatctga 28285586  T
Q  155 ccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgttcatcagcttcatccgggtgaa 254  Q
    ||||| ||||||||||||||||||| |||||| |||| ||||||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||    
T  28285587 ccaacaaagcgtccaactcgatcggccctctattactatactgaccaaagattgagaatatggttctcacgtcgtcgttcatgagcttcatccgggtgaa 28285686  T
Q  255 ccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagc 354  Q
    || ||||||||| ||||||||| |||||||| || |||||||||||  ||||||||||||||||||| | ||||||||||||||| | ||| ||||||      
T  28285687 ccacacactcctcgctgagtcggtcgatggacgtcgatactcaacataatccaccctccgtgtgtctttgtagttgagttggcgggtaatttgatccaat 28285786  T
Q  355 tgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggttt-ctccccgttgtagtaaactgtaactagcttg 444  Q
    |||||||||| | |||| |||| ||||| ||||||||| ||||| |||||   |||||| | |||||||||||||||||| | ||||||||    
T  28285787 tgacccttcaacccagatagggtgacatcagtgtgaattctgaacagatgaggtggtttgccccccgttgtagtaaactgcagctagcttg 28285877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 120 - 444
Target Start/End: Complemental strand, 16796329 - 16796002
Alignment:
Q  120 gatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggtt 219  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | || | |||| ||||||| |||||||| |||| ||| ||    
T  16796329 gatcaaacttttatgaatttcttcaacagatctgaccaacgaagcgtccaactcgatcgttgcttttgtaccgtactgagcaaagatcgagaacatgttt 16796230  T
Q  220 ctcacgt---cgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtg 316  Q
    |||| ||   || ||||||| ||||||||| |  | ||||||||| ||| ||||||||| || |||||| ||  |||||||||||| ||||||||||       
T  16796229 ctcatgttgtcgtcgttcatgagcttcatctgacttaaccgcacagtccctgctgagtcaatagatggacgtcaatactcaacaccgtccaccctcctca 16796130  T
Q  317 tgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctc 416  Q
    ||||||| | ||||||||| | ||||||| ||||||||| | |||||| | | ||||||| ||||| | || |||||||||||||||||  | ||||  |    
T  16796129 tgtctctgtggttgagttgacagttgatttgatccagctaatccttcaactcggagagggtgacatcaatgcgaatcctgaatagatgggatagttttcc 16796030  T
Q  417 cccgttgtagtaaactgtaactagcttg 444  Q
    || ||| |||||||||||||||||||||    
T  16796029 cctgttatagtaaactgtaactagcttg 16796002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 41835909 - 41836038
Alignment:
Q  99 ctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactga 198  Q
    ||||||||| ||| |||| |||  |||||||||  ||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  41835909 ctcttcgtatttcctgggccagtgcaaacttttcagaatttgttcagcatttctaaccaacgaagcgtccaactcgatcggtcctgtagtactgtgctga 41836008  T
Q  199 ccaaagatcaagaatatggttctcacgtcg 228  Q
    |||||||   |||| |||||||||||||||    
T  41836009 ccaaagacagagaacatggttctcacgtcg 41836038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 11458033 - 11458212
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||||| ||||| |||| ||||| | |||||| | ||  || ||||| |||||||| |||||| | || | ||||||| |||  ||||| |||||||    
T  11458033 cacagatcatctaaactaatgtcttcgtgtggtgcattcattagcgcccttatctcttcatagttccttggccggatcaaattttgttgaatatgttcaa 11458132  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacg 225  Q
    || ||||||||||| ||||||| ||||||||||| |||||||||||| |||||| ||||||  |||| ||||||||||||    
T  11458133 caaatctgaccaacaaagcgtctaactcgatcggccctctagtactgaactgacaaaagatgtagaacatggttctcacg 11458212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 19330216 - 19330084
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    |||||||||| |||||||||| |||| |  |||||||||||  |||||||||||| | || ||||||| ||||| ||||||| |||||||||| |||||     
T  19330216 gccctaatcttttcgtagttcatgggacgaatcaaactttttagaatttgttcaatagatttgaccaatgaagcatccaacttgatcggtcctttagtat 19330117  T
Q  191 tgtactgaccaaagatcaagaatatggttctca 223  Q
    |||||| ||||||||| ||||| ||||||||||    
T  19330116 tgtacttaccaaagattaagaacatggttctca 19330084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 24831979 - 24832090
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    |||| |||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| |||||||||| ||||||||||||| ||||||| ||||    
T  24831979 gcccgaatctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcaaatctaaccaacgaagtgtccaactcgatcagtcctcttgtac 24832078  T
Q  191 tgtactgaccaa 202  Q
    ||| ||||||||    
T  24832079 tgtgctgaccaa 24832090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 10647 - 10524
Alignment:
Q  82 tccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||| || |||| |||||||||||| ||| |||  | |  |||||||||  ||||||||||| || |||| ||||||||| ||||||||||||||||||    
T  10647 tccagcagagcccgaatctcttcgtatttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaaacgtccaactcgatcggtc 10548  T
Q  182 ctctagtactgtactgaccaaaga 205  Q
    |||| ||| |||  ||||||||||    
T  10547 ctcttgtattgtgttgaccaaaga 10524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 269 - 444
Target Start/End: Original strand, 14194125 - 14194300
Alignment:
Q  269 ctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcac 368  Q
    |||||||| ||||||||  | ||||||||||||| |||||| | | | ||||| | | ||||||||||||||||||| ||||||  ||| | |||| | |    
T  14194125 ctgagtcggtcgatggacttcgatactcaacaccgtccacctttcttatgtctatgtggttgagttggcggttgatttgatccatatgatctttcaaccc 14194224  T
Q  369 agagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
      | |    ||||| ||||||||||||||| ||||||  ||||||  |||||||||||||||||| ||||||||||    
T  14194225 gaaaatattgacatcagtgtgaatcctgaacagatggggtggttttcccccgttgtagtaaactgcaactagcttg 14194300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 444
Target Start/End: Original strand, 12191373 - 12191522
Alignment:
Q  294 ctcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatc 393  Q
    ||||||||| |||||||||| ||||||| | | ||||| ||| ||||||||| ||||||||||| | || | | | |||| || ||||| |||| |||||    
T  12191373 ctcaacaccgtccaccctccttgtgtctttgtggttgaattgacggttgatttgatccagctgatcatttaacccggagaaggtgacatcagtgcgaatc 12191472  T
Q  394 ctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    ||||| | ||| | |||||| ||||  ||||||||||||| | ||||||||    
T  12191473 ctgaacatatgaagtggttt-tccctattgtagtaaactgcagctagcttg 12191522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 444
Target Start/End: Original strand, 12435801 - 12435950
Alignment:
Q  294 ctcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatc 393  Q
    ||||||||| |||||||||| ||||||| | | ||||| ||| ||||||||| ||||||||||| | || | | | |||| || ||||| |||| |||||    
T  12435801 ctcaacaccgtccaccctccttgtgtctttgtggttgaattgacggttgatttgatccagctgatcatttaacccggagaaggtgacatcagtgcgaatc 12435900  T
Q  394 ctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    ||||| | ||| | |||||| ||||  ||||||||||||| | ||||||||    
T  12435901 ctgaacatatgaagtggttt-tccctattgtagtaaactgcagctagcttg 12435950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 12573440 - 12573340
Alignment:
Q  124 aaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca 223  Q
    |||||||| ||||  | ||||| |||||||||||  ||||| ||||||||||| ||| || ||| |||||| |||||||| || ||||| ||| ||||||    
T  12573440 aaacttttctgaaaatcttcaaaatatctgaccatggaagcatccaactcgattggttctttagaactgtattgaccaaatattaagaacatgattctca 12573341  T
Q  224 c 224  Q
    |    
T  12573340 c 12573340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 21217790 - 21217858
Alignment:
Q  152 tgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttc 220  Q
    ||||||| ||||||||||||||||||| |  | ||| ||| ||||||||||| |||||||| |||||||    
T  21217790 tgaccaatgaagcgtccaactcgatcgattatttagaactatactgaccaaatatcaagaacatggttc 21217858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 21446182 - 21446234
Alignment:
Q  171 ctcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca 223  Q
    |||||||||||||  |||||||||||||| ||| |||||||| ||||||||||    
T  21446182 ctcgatcggtccttcagtactgtactgactaaatatcaagaacatggttctca 21446234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 51 - 430
Target Start/End: Complemental strand, 37126885 - 37126504
Alignment:
Q  51 atcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatat 150  Q
    ||||||||||||||| ||||| | ||||||||| |||||||| || ||||||||||||||| |||  |  ||||||||||| ||||||||||||||| ||    
T  37126885 atcaactaaattaatgtcttcgtgtggtgcgtcgaggagtgcactgatctcttcgtagttcctggaccgaatcaaacttttctgaatttgttcaacagat 37126786  T
Q  151 ctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac---gtcgccgttcatcagcttcatcc 247  Q
     |||||||||||||||||||||||||||  |||||||||||||||| || ||||||| |||| |||||||||||   |||| ||||||| |||||||| |    
T  37126785 gtgaccaacgaagcgtccaactcgatcgaccctctagtactgtactaactaaagatcgagaaaatggttctcacgtcgtcgtcgttcatgagcttcattc 37126686  T
Q  248 gggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcg 347  Q
    || |||||||||||||||| | ||||| | ||||| || || |||||||||||||||||||||||||||| |||||  | |||||||| || |||||| |    
T  37126685 ggctgaaccgcacactcctggatgagtaggtcgatagacgtcgatactcaacaccatccaccctccgtgtttctctgcaattgagttgacgattgatttg 37126586  T
Q  348 atccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaa 430  Q
    ||| | ||||||||||| | | ||||||| ||||| |||  |||||||||| ||||||  |||||| ||||||||||||||||    
T  37126585 atctatctgacccttcaacccggagagggtgacatcagtacgaatcctgaacagatggggtggttt-tccccgttgtagtaaa 37126504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 143 - 364
Target Start/End: Original strand, 33946102 - 33946326
Alignment:
Q  143 caacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac---gtcgccgttcatcag 239  Q
    ||||| ||||||||||| |||||||||| | ||||||  |||||||| |||| | || ||| ||| |||| |||||||||||   |||| ||||||| ||    
T  33946102 caacaaatctgaccaactaagcgtccaatttgatcggctctctagtattgtagtaacaaaatatcgagaacatggttctcacatcgtcgtcgttcatgag 33946201  T
Q  240 cttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcgg 339  Q
    |||||||||| |||||||||||||||   |||||||  ||||||||  | |||||||||||| ||||||||||||||||||| | ||||||| |||||||    
T  33946202 cttcatccggctgaaccgcacactcccgactgagtcagtcgatggacatcgatactcaacactatccaccctccgtgtgtctttgtagttgaattggcgg 33946301  T
Q  340 ttgattcgatccagctgacccttca 364  Q
    |||||| ||||||||||||||||||    
T  33946302 ttgatttgatccagctgacccttca 33946326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 345
Target Start/End: Complemental strand, 21484125 - 21483839
Alignment:
Q  62 taatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacga 161  Q
    |||| ||||| | ||||| |||||  |||||||| ||||||||||||||| | |||| |||||||||||   |||| ||||||| | |||||||||||||    
T  21484125 taatatcttcgtctggtgtgtccattagtgccctgatctcttcgtagttccttggtcggatcaaactttgtcgaatatgttcaatagatctgaccaacga 21484026  T
Q  162 agcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac---gtcgccgttcatcagcttcatccgggtgaaccgc 258  Q
    |||||||||| |||| |  |||||| |||||  ||||| ||||||  |||| ||| |||||||   |||| ||||||| || ||||||||||||||||||    
T  21484025 agcgtccaacacgattgtccctctaatactgagctgactaaagatggagaacatgattctcacgtcgtcgtcgttcatgagtttcatccgggtgaaccgc 21483926  T
Q  259 acactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgatt 345  Q
    ||||| || | ||||||| |||| | |  | |||||| |||||||||||||||  ||||||| || |||||||||| | ||||||||    
T  21483925 acacttctggatgagtcggtcgacgaacatcgatacttaacaccatccaccctttgtgtgtccctgtagttgagttcgaggttgatt 21483839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 147 - 364
Target Start/End: Complemental strand, 25630833 - 25630613
Alignment:
Q  147 atatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacg---tcgccgttcatcagcttc 243  Q
    |||||||||| | ||||||||||| |||| || | |||||||||||||||||||||||||| |||| |||||| |||||   ||| |||| || ||||||    
T  25630833 atatctgacctatgaagcgtccaattcgaccgattctctagtactgtactgaccaaagatcgagaacatggttatcacgccgtcgtcgtttatgagcttc 25630734  T
Q  244 atccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttga 343  Q
    ||||   ||||| ||||||| |  |||||| || ||||||||  ||||||||||||||| ||||||||||||| |||||| | ||||||||| | |||||    
T  25630733 atccaactgaactgcacacttccggctgagccggtcgatggacattgatactcaacaccgtccaccctccgtgcgtctctgtggttgagttgacagttga 25630634  T
Q  344 ttcgatccagctgacccttca 364  Q
    || |||||||| |||||||||    
T  25630633 tttgatccagccgacccttca 25630613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 433
Target Start/End: Original strand, 2734560 - 2734739
Alignment:
Q  254 accgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccag 353  Q
    ||||| ||||||  ||||||||  |||||||| || |||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||| |||||||    
T  2734560 accgcgcactcccggctgagtcagtcgatggaggtcgatactcaacaccatccaccctctatgtgtctctgtagttgagttgacggttgatttgatccag 2734659  T
Q  354 ctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactg 433  Q
    ||||||||||| |   ||||||| ||||| |||  |||||||||| ||||||  || ||||  ||| |||||||||||||    
T  2734660 ctgacccttcaacctggagagggtgacatcagtacgaatcctgaacagatggtatgttttccacccattgtagtaaactg 2734739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 18964517 - 18964695
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||| ||| |||||| | |||| | ||||| || ||||| ||||||||||||||| |||  | ||||||||||||  ||||||||||| ||||    
T  18964517 gatcatctaaactaacttcttcctctggtccctccagtagagccctgatctcttcgtagttcctggaccggatcaaactttttcgaatttgttcagcata 18964616  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| |||||| |||| |||||||||||  ||| ||||||||||| |||||||||||   |||| |||||||||||||||    
T  18964617 tctaaccaacaaagcatccaactcgattagtcatctagtactgtgctgaccaaagacagagaacatggttctcacgtcg 18964695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 15112218 - 15112107
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||   |||| |||||||||    
T  15112218 caaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcatcttgtactgtgctgaccaaagacagagaacatggttctc 15112119  T
Q  223 acgtcgccgttc 234  Q
    |||||| |||||    
T  15112118 acgtcgtcgttc 15112107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 5937234 - 5937077
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||| | |  |||| ||||  ||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||  |    
T  5937234 atctcttcgtagttcctgggccggtgcaaaattttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcttctagtactgtgtt 5937135  T
Q  197 gaccaaagatcaagaatatggttctcacgtcgccgttcatcagcttcatccgggtgaa 254  Q
    ||||||||    |||| |||||||||||||||  |||| | || ||||||||| ||||    
T  5937134 gaccaaagccagagaacatggttctcacgtcgttgttcgtgagtttcatccggttgaa 5937077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 34949730 - 34949861
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||| | |  |||||||||  ||||||||||| || |||| ||||||||| ||||||||||||||||||||| |||| ||| ||    
T  34949730 atctcttcgtagttcctgggccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaaacgtccaactcgatcggtcctcgagtattgtgct 34949829  T
Q  197 gaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| |||||   |||| |||||||||| ||||    
T  34949830 gacgaaagacagagaacatggttctcatgtcg 34949861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 5463254 - 5463172
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaaga 205  Q
    |||||||||  ||||||||||| || || | |||||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  5463254 caaacttttcagaatttgttcagcagatttaaccaacgaagcgtccaactcgatcggtcctcttgtactctgctgaccaaaga 5463172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 35096388 - 35096244
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||||||||||| |||||| ||| | |||| | || || || ||||| ||||| ||||||||||||  ||  ||||||||||| ||||||| |||||    
T  35096388 cacagatcaactaaactaattttttcgtctggttcctctagcagagccctgatctcctcgtagttcttgtatcgaatcaaacttttctgaatttcttcaa 35096289  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
     | |||| ||||||||||| |  ||||||||||||| | ||||||    
T  35096288 tagatctaaccaacgaagcataaaactcgatcggtcttttagtac 35096244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 42014973 - 42014863
Alignment:
Q  116 gtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatat 215  Q
    ||||||||||||||||  |||||| ||| ||| || |||| || ||||||||||||||||||| |||| ||||||||||||| ||||| ||  |||  ||    
T  42014973 gtcagatcaaactttttagaatttattccacagatttgacaaatgaagcgtccaactcgatcgatcctttagtactgtactg-ccaaatattgagatcat 42014875  T
Q  216 ggttctcacgtc 227  Q
    ||||||||||||    
T  42014874 ggttctcacgtc 42014863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 42014832 - 42014750
Alignment:
Q  270 tgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatcca 352  Q
    ||||| ||||||||||  | |||||||||||||||||||||||| ||||||||| | | ||||||| ||||||||| ||||||    
T  42014832 tgagttgatcgatggacttcgatactcaacaccatccaccctccttgtgtctctgtgggtgagttgacggttgatttgatcca 42014750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 321
Target Start/End: Original strand, 41255369 - 41255571
Alignment:
Q  121 atcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttc 220  Q
    ||||||||||| ||||||| |||||||||| | ||||| ||| ||||||||| |   ||| || ||||| |||| |||| ||| |||||||| |    ||    
T  41255369 atcaaactttt-tgaatttcttcaacatatgtcaccaatgaaacgtccaacttgggtggttctttagtattgtattgactaaatatcaagaacaccagtc 41255467  T
Q  221 tcacgtc---gccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgt 317  Q
    |||| ||   | ||||||| || |||||| |||||||| |||| || |  ||||||||| || ||||| || |||||||||||| ||||||||||| |||    
T  41255468 tcacatcatcgtcgttcatgagattcatctgggtgaactgcactcttccagctgagtcggtcaatggacgtcgatactcaacactatccaccctccttgt 41255567  T
Q  318 gtct 321  Q
    ||||    
T  41255568 gtct 41255571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 32122382 - 32122259
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||||||||| |||||||||| | |||| | | ||| || ||||| ||| ||||||||||  | |||| |||| |||||||||||||||  |||||| |    
T  32122382 gatcaactaaactaatttcttcgtctggttccttcagcagagccctgatcccttcgtagtttctaggtcggatcgaacttttatgaatttcatcaacaaa 32122283  T
Q  150 tctgaccaacgaagcgtccaactc 173  Q
    ||| ||||  ||||||| ||||||    
T  32122282 tctaaccagtgaagcgtgcaactc 32122259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 32475467 - 32475534
Alignment:
Q  161 aagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||||||||||||||||||||||| ||||| |||||| || ||| ||| | || |||||||||||||||    
T  32475467 aagcgtccaactcgatcggtcctttagtaatgtactaacaaaatatcgataacatggttctcacgtcg 32475534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 5463069 - 5462992
Alignment:
Q  305 ccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacat 382  Q
    |||||||||  |||||| | | ||||||||| ||||| ||||||||||||| | |||||||| | ||||||| |||||    
T  5463069 ccaccctcctcgtgtctttgtggttgagttgacggttaattcgatccagctcatccttcagcccggagagggtgacat 5462992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 75 - 444
Target Start/End: Complemental strand, 1905976 - 1905602
Alignment:
Q  75 tggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcg 174  Q
    ||||| |||||| |||| ||| |||||||  |||||| |||||| ||||||| |||| ||||||||||||| | |||| |||||||||||||||||||||    
T  1905976 tggtgtgtccagcagtgtcctgatctctttatagttcatgggtcggatcaaaattttctgaatttgttcaaaagatcttaccaacgaagcgtccaactcg 1905877  T
Q  175 atcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgc---cgttcatcagcttcatccgggtgaaccgcacactccttgctg 271  Q
    ||||||||||||||| |||| |||||||||||| |||| |||||| ||| || |    ||||||  | ||||||| || |||||| |||||||||  |||    
T  1905876 atcggtcctctagtattgtaatgaccaaagatcgagaacatggttatcatgttgttgtcgttcacgaacttcatctggctgaaccacacactcctgactg 1905777  T
Q  272 agtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacaga 371  Q
    |||||||| ||||| || ||||||||||||| |||||||||||||||||||| | |||| |||||||||  ||| |||||||||||||||||| | || |    
T  1905776 agtcgatcaatggacgtcgatactcaacaccgtccaccctccgtgtgtctctgtggttgtgttggcggtatatttgatccagctgacccttcaacccaaa 1905677  T
Q  372 gagggcgacataagtgtgaatcctgaatagatgga--ttggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    ||||| ||||| |||||||||||  |||||||||   | | |||| |||||||||||||||||| | ||||||||    
T  1905676 gagggtgacattagtgtgaatcccaaatagatgggggtggttttccccccgttgtagtaaactgcagctagcttg 1905602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 433
Target Start/End: Original strand, 1853513 - 1853899
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| |||||||||| ||||  | |||||||| ||  |||||  | ||||||||||||||| | || |  ||||||||||  ||||| ||||| ||| |    
T  1853513 gatcatctaaattaatgtctttgtttggtgcgttcattagtgcaatgatctcttcgtagttcgttggccgaatcaaactttgttgaatatgttccacaga 1853612  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgt---tcatcagcttcatc 246  Q
    ||||||||||||||||||||||  |||||| ||||||||| || |||||||||||||  |||| ||||||||||||||| |||   |||| || || |||    
T  1853613 tctgaccaacgaagcgtccaacaagatcggccctctagtattgaactgaccaaagatggagaacatggttctcacgtcgtcgtcgttcatgagtttgatc 1853712  T
Q  247 cgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattc 346  Q
    ||| ||||||||||||||   ||||||| |||||| ||| || ||||||||||||||||||||||| |||||||||| |||||||||| |  |||||||     
T  1853713 cggctgaaccgcacactctcggctgagttgatcgacggacgtcgatactcaacaccatccaccctcagtgtgtctctgtagttgagttcgatgttgattt 1853812  T
Q  347 gatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactg 433  Q
    |||  ||||||| ||||| | |  |||||| ||||| |||| |||||||||| ||||||  ||||||   ||||||| |||||||||    
T  1853813 gatttagctgactcttcaacccgaagagggtgacatcagtgggaatcctgaacagatggggtggttttctcccgttgcagtaaactg 1853899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 46 - 405
Target Start/End: Complemental strand, 19516295 - 19515925
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    |||| |||| |||||||||| ||||| | |||||||| ||  |||||||||||||||||||||||  |||||| |||||||||||  |||||||||||||    
T  19516295 cacatatcatctaaattaatgtcttcgtgtggtgcgtacattagtgccctaatctcttcgtagtttctgggtcggatcaaactttgttgaatttgttcaa 19516196  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtact---gtactgaccaaagatcaagaatatggttctcacgtcgc---cgttcatcag 239  Q
     | ||||||||||||||||||||||||| |||   |||||||||||    |||| |||||||||| |||| ||||||||||||||||   ||||||  ||    
T  19516195 gagatctgaccaacgaagcgtccaactcaatcaaccctctagtactatactactaaccaaagatcgagaacatggttctcacgtcgctgtcgttcacgag 19516096  T
Q  240 cttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctc-----tttagttgagtt 334  Q
     |||| |||  |||||||||||||||   |||||||| ||||   | ||  |||||||||||||||||||||  |||||||||     || |||||||||    
T  19516095 tttcaaccgactgaaccgcacactcccgactgagtcggtcgacaaacgtcaatactcaacaccatccaccctttgtgtgtctctgtagttgagttgagtt 19515996  T
Q  335 ggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
    |  |||||||| |||  ||||||||||||| |  |||||||| ||||| |||| | ||||| |||||||||    
T  19515995 gaaggttgatttgattaagctgacccttcatcctagagagggtgacatcagtggggatccttaatagatgg 19515925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 22203619 - 22203441
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||| ||| |||||| | |||| | ||||| || ||||| ||||||||||||||| |||| | |||||||||||| | |||||||||| || |    
T  22203619 gatcatctaaactaacttcttcctctggtccctccagcagagccctgatctcttcgtagttcctgggccggatcaaactttttttaatttgttcagcaga 22203520  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||   |||| |||||||||||||||    
T  22203519 tctaaccaacgaagcgtccaacttgatcggtcctctagtattgtgctgaccaaagacagagaacatggttctcacgtcg 22203441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 1378654 - 1378786
Alignment:
Q  92 ccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtact 191  Q
    |||| ||||||||||||||| |||| | ||||||| |||  ||||| |||| |||| |||| ||||||||||| ||||||| ||| ||||||||||||||    
T  1378654 ccctgatctcttcgtagttcctgggccggatcaaaatttgttgaatatgttaaacaaatctaaccaacgaagcatccaacttgattggtcctctagtact 1378753  T
Q  192 gtactgaccaaagatcaagaatatggttctcac 224  Q
    |||||||||||||||| |||| |||||||||||    
T  1378754 gtactgaccaaagatcgagaacatggttctcac 1378786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 97 - 382
Target Start/End: Original strand, 33851302 - 33851590
Alignment:
Q  97 atctcttcgtagttcttgggtcagat-caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtac 195  Q
    ||||||||||||||| ||| || ||| |||||||||  ||||||||||| |  |||| |||||||||||||||||||||||||||||||| ||||||| |    
T  33851302 atctcttcgtagttcctgg-tccgatgcaaacttttcagaatttgttcagccgatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgc 33851400  T
Q  196 tgaccaaagatcaagaatatggttctca---cgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgat 292  Q
    ||||||||||   |||| ||||||| ||   ||||| ||||| | || ||||||||| |||| || | |   || |||||||||  | |||||| | |||    
T  33851401 tgaccaaagacagagaacatggttcacacgtcgtcgtcgttcttgagtttcatccggatgaagcgaagagatctggctgagtcggacaatggatatcgat 33851500  T
Q  293 actcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacat 382  Q
    | ||||| ||  |||||||||  |||||| | | ||||||||| ||||||||| ||||||||| | |||||||| | ||||||| |||||    
T  33851501 attcaactccgaccaccctcctcgtgtctttgtggttgagttgacggttgatttgatccagctcatccttcagctcggagagggtgacat 33851590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 15031508 - 15031371
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    |||| |||||||||||||||| |||  |||  |||||||||  ||||||||||| || |||| ||| |||||||||||||||||||||||||||| ||||    
T  15031508 gcccgaatctcttcgtagttcctggtccagtgcaaacttttcagaatttgttcagcagatctaaccgacgaagcgtccaactcgatcggtcctcttgtac 15031409  T
Q  191 tgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| |||||||||||   |||| ||||||| |||||||    
T  15031408 tgtgctgaccaaagacagagaacatggttcgcacgtcg 15031371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 109924 - 110055
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||| ||    
T  109924 atctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgct 110023  T
Q  197 gaccaaagatcaagaatatggttctcacgtcg 228  Q
    |||||||||   |||| ||||||| |||||||    
T  110024 gaccaaagacagagaacatggttcgcacgtcg 110055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 26793221 - 26793352
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  |||||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||| ||    
T  26793221 atctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcaacagatctaaccaacgaagcgtccaactcgatcgatcctcttgtactgtgct 26793320  T
Q  197 gaccaaagatcaagaatatggttctcacgtcg 228  Q
    |||||||||   |||| ||||||| |||||||    
T  26793321 gaccaaagacagagaacatggttcgcacgtcg 26793352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 18043882 - 18044036
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    |||||||| ||||||||||||||||| |  ||||||||||| ||||| | ||| | | | |||||||| |||| || |||||| ||||||||| |||||     
T  18043882 gccctaatttcttcgtagttcttgggccgaatcaaacttttctgaatatcttcgaaagacctgaccaaagaagagttcaactcaatcggtcctttagtat 18043981  T
Q  191 tgtactgaccaaagatcaagaatatggttctcacgtcgccgttcatcagcttcat 245  Q
    ||||||||| ||| ||| ||||||||||| |||||||| ||||| | ||||||||    
T  18043982 tgtactgacaaaatatcgagaatatggttttcacgtcgtcgttcctgagcttcat 18044036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 35583960 - 35583852
Alignment:
Q  97 atctcttcgtagttcttgggtcagat-caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtac 195  Q
    ||||||||||||||| ||| |||| | |||||||||  ||||||||||| || |||| ||| |||||||||||||||||||||||||||||||||||| |    
T  35583960 atctcttcgtagttcctgg-tcaggtgcaaacttttcagaatttgttcagcagatctaacctacgaagcgtccaactcgatcggtcctctagtactgtgc 35583862  T
Q  196 tgaccaaaga 205  Q
    ||||||||||    
T  35583861 tgaccaaaga 35583852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 7254297 - 7254162
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    |||| |||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| || ||||||| ||||||||||||||||||||| ||||    
T  7254297 gcccgaatctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaactaacgaagtgtccaactcgatcggtcctcttgtac 7254198  T
Q  191 tgtactgaccaaagatcaagaatatggttctcacgt 226  Q
    ||| |||||||||||  ||||| ||||||| |||||    
T  7254197 tgtgctgaccaaagacaaagaacatggttcgcacgt 7254162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 29331137 - 29331066
Alignment:
Q  134 gaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaaga 205  Q
    ||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  29331137 gaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgctgaccaaaga 29331066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 38256383 - 38256273
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||||||||| ||||||| |||||| ||||   |||| ||||||| |    
T  38256383 caaacttttcagaatttgttcagcagatctaaccaacgaagcgaccaactcgatcggtcctcttgtactgtgctgaccgaagacatagaacatggttcgc 38256284  T
Q  223 acgtcgccgtt 233  Q
    |||||| ||||    
T  38256283 acgtcgtcgtt 38256273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 38263958 - 38263848
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||||||||| ||||||| |||||| ||||   |||| ||||||| |    
T  38263958 caaacttttcagaatttgttcagcagatctaaccaacgaagcgaccaactcgatcggtcctcttgtactgtgctgaccgaagacatagaacatggttcgc 38263859  T
Q  223 acgtcgccgtt 233  Q
    |||||| ||||    
T  38263858 acgtcgtcgtt 38263848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 37999887 - 37999992
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||||  || |||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||   |||| ||||||| |    
T  37999887 caaacttttcagaatttgttctgcagatctaaccaacgaagcgtacaactcgatcggtcctcttgtactgtgctgaccaaagacatagaacatggttcgc 37999986  T
Q  223 acgtcg 228  Q
    ||||||    
T  37999987 acgtcg 37999992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 43748110 - 43748003
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||  |||||||||||||||||||| ||||||||||| ||||||| ||    
T  43748110 atctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatccaaccaacgaagcgtccaactcaatcggtcctcttgtactgtgct 43748011  T
Q  197 gaccaaag 204  Q
    ||||||||    
T  43748010 gaccaaag 43748003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 2670064 - 2670171
Alignment:
Q  121 atcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttc 220  Q
    ||||||||||| ||||| | ||||| | |||| ||||| |||||||||||||| ||||||||| ||||| || | |||||||| ||  |||| || ||||    
T  2670064 atcaaacttttttgaatatcttcaaaagatcttaccaatgaagcgtccaactcaatcggtcctttagtaatgcattgaccaaatattgagaacattgttc 2670163  T
Q  221 tcacgtcg 228  Q
    ||||||||    
T  2670164 tcacgtcg 2670171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 432
Target Start/End: Original strand, 1380233 - 1380363
Alignment:
Q  302 catccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatag 401  Q
    |||||||||||||||||||| | |||||||||| | |||| ||| ||| |||| ||| ||||| | | ||||||| || || |||| ||||| |||| |     
T  1380233 catccaccctccgtgtgtctttgtagttgagtttgaggttaatttgattcagccgactcttcaacccggagagggtgagatcagtgggaatcttgaacaa 1380332  T
Q  402 atggattggtttctccccgttgtagtaaact 432  Q
    ||||  ||||||| || ||||||||||||||    
T  1380333 atgggatggtttcccctcgttgtagtaaact 1380363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 432
Target Start/End: Original strand, 1386337 - 1386467
Alignment:
Q  302 catccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatag 401  Q
    |||||||||||||||||||| | |||||||||| | |||| ||| ||| |||| ||| ||||| | | ||||||| || || |||| ||||| |||| |     
T  1386337 catccaccctccgtgtgtctttgtagttgagtttgaggttaatttgattcagccgactcttcaacccggagagggtgagatcagtgggaatcttgaacaa 1386436  T
Q  402 atggattggtttctccccgttgtagtaaact 432  Q
    ||||  ||||||| || ||||||||||||||    
T  1386437 atgggatggtttcccctcgttgtagtaaact 1386467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 56 - 342
Target Start/End: Original strand, 49606379 - 49606668
Alignment:
Q  56 ctaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgac 155  Q
    |||||||||| ||||| | ||||||||| ||||||||||| |||||||| |||| | |||||| |||||||||||| ||||||||||||||| |||||||    
T  49606379 ctaaattaatgtcttcgtgtggtgcgtcaaggagtgccctgatctcttcatagtacctgggtcggatcaaacttttttgaatttgttcaacagatctgac 49606478  T
Q  156 caacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccg---ttcatcagcttcatccgggtg 252  Q
    |||||||| ||||||||||||||  ||||||||| |||| |||||||||||| |||| ||||||||||||||| ||   ||||| |||||||||||| ||    
T  49606479 caacgaagtgtccaactcgatcgaccctctagtattgtattgaccaaagatcgagaacatggttctcacgtcgtcgtcattcataagcttcatccggctg 49606578  T
Q  253 aaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttg 342  Q
    ||||||| |||||   |||||||| ||||||| ||| |||||||||||||||||||| |  |||||||| | || ||||||||| |||||    
T  49606579 aaccgcatactcccgactgagtcggtcgatggttgtcgatactcaacaccatccaccatttgtgtgtctttgtacttgagttggtggttg 49606668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 75 - 444
Target Start/End: Original strand, 23185821 - 23186196
Alignment:
Q  75 tggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcg 174  Q
    |||||||||||  |||||||| ||||||  ||| ||| |  ||  |||| ||||||  ||||| ||||||||| ||||||||||||||||||||||||||    
T  23185821 tggtgcgtccattagtgccctgatctctctgtaattccttagttggatcgaactttgttgaatatgttcaacagatctgaccaacgaagcgtccaactcg 23185920  T
Q  175 atcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg------ccgttcatcagcttcatccgggtgaaccgcacactccttg 268  Q
    ||||  |||||||||||||||||| |||||||| |||| |||||||| ||||||       ||||||  ||||||||| || ||||| |||||||||       
T  23185921 atcgaccctctagtactgtactgatcaaagatcgagaacatggttctaacgtcgtcgtcatcgttcacgagcttcatctggctgaactgcacactcccaa 23186020  T
Q  269 ctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcac 368  Q
    |||||||| | || ||| ||  |||||||||||||||||||||| || ||||||| ||||| |||| | |||||||| ||| |||||||| ||||| | |    
T  23186021 ctgagtcggtggacggacgtcaatactcaacaccatccaccctcagtctgtctctatagtttagttcgaggttgatttgattcagctgactcttcaaccc 23186120  T
Q  369 agagagggcgacataagtgtgaatcctgaatagat-ggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
     ||||| | ||||| || | ||||| ||| ||||| ||  ||||||| |||||||||||||||||| || |||||||    
T  23186121 ggagagtgtgacatcagcgggaatcatgattagatgggggtggtttc-ccccgttgtagtaaactgcaattagcttg 23186196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 11648920 - 11649049
Alignment:
Q  99 ctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactga 198  Q
    ||||||||| ||| |||| |||  |||||||||  ||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  11648920 ctcttcgtatttcctgggccagtgcaaacttttcagaatttgttcagcatttctaaccaacgaagcgtccaactcgatcggtcctgtagtactgtgctga 11649019  T
Q  199 ccaaagatcaagaatatggttctcacgtcg 228  Q
    |||||||   |||| |||||||||||||||    
T  11649020 ccaaagacagagaacatggttctcacgtcg 11649049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 44109186 - 44109317
Alignment:
Q  97 atctcttcgtagttcttgggtcagat-caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtac 195  Q
    ||||||||||||||| ||| |||| | |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |    
T  44109186 atctcttcgtagttcctgg-tcaggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctctagtactgtgc 44109284  T
Q  196 tgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||||||||||   |||| ||||||| |||||||    
T  44109285 tgaccaaagacagagaacatggttcgcacgtcg 44109317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 53270656 - 53270750
Alignment:
Q  134 gaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||  || || |||||||||||||||    
T  53270656 gaatttgttcagcatatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgctgaccaaagacaaataacatggttctcacgtcg 53270750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 55610598 - 55610475
Alignment:
Q  82 tccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||| || |||| |||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| ||||||||||||||||||||||||||||    
T  55610598 tccagcagagcccgaatctcttcgtagttcctggcccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtc 55610499  T
Q  182 ctctagtactgtactgaccaaaga 205  Q
    |||| ||||||| |||||||||||    
T  55610498 ctcttgtactgtgctgaccaaaga 55610475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 52918394 - 52918257
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    ||||| ||||||||||||||| |||  | |  |||||||||  ||||||||||| || || | |||||||||||||||||||||||||||||||| ||||    
T  52918394 gccctgatctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatataaccaacgaagcgtccaactcgatcggtcctcttgtac 52918295  T
Q  191 tgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| |||||||||||   |||||||||||  |||||||    
T  52918294 tgtgctgaccaaagacagagaatatggtttgcacgtcg 52918257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 123 - 323
Target Start/End: Complemental strand, 29552106 - 29551903
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    ||||||||| ||| ||| ||||| | ||||||  || ||||  ||||||||||| | |||| ||||||||||||||||||| ||| |||| |||||||||    
T  29552106 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcctttagtactgtactgaccaaatatcgagaacatggttctc 29552007  T
Q  223 acgtcgccg---ttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgt 319  Q
    |||||| ||   ||||| ||| ||||| |  ||||| |||| || |  ||||||||  || ||||| |  |||||||||||||||||||||||| |||||    
T  29552006 acgtcgtcgtcattcatgagcatcatctgattgaactgcactcttccggctgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgt 29551907  T
Q  320 ctct 323  Q
    ||||    
T  29551906 ctct 29551903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 38989573 - 38989469
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||   |||| ||||||| |    
T  38989573 caaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctattgtactgtgctgaccaaagacagagaacatggttcgc 38989474  T
Q  223 acgtc 227  Q
    |||||    
T  38989473 acgtc 38989469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 8910112 - 8909966
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||||| ||||| |||| ||||| |||||||||||||  |||||||| |||||||| |||||| | || | ||||||| |||  ||||| |||||||    
T  8910112 cacagatcatctaaactaatgtcttcgtatggtgcgtccattagtgccctgatctcttcatagttcctaggccggatcaaattttgttgaatatgttcaa 8910013  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactg 192  Q
     | || | |||||||||   |||||||||||||  ||||||||||||    
T  8910012 tagattttaccaacgaaatatccaactcgatcgaccctctagtactg 8909966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 40761298 - 40761184
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    |||| |||||||||||||||| ||| || |  |||||||||  ||||||||||| || |||| |||||||||  |||||||||||||| |||||| |||     
T  40761298 gcccgaatctcttcgtagttcctggttcggtgcaaacttttcagaatttgttcagcaaatctaaccaacgaaaagtccaactcgatcgatcctcttgtat 40761199  T
Q  191 tgtactgaccaaaga 205  Q
    ||| |||||||||||    
T  40761198 tgtgctgaccaaaga 40761184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 40691851 - 40691746
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||| |  |||||| ||||||||||||||||||||||| |||||||| ||||||| || ||||||||   |||| ||||||| |    
T  40691851 caaacttttcagaatttgttaagtatatctaaccaacgaagcgtccaactcgattggtcctcttgtactgtgctaaccaaagacatagaacatggttcgc 40691752  T
Q  223 acgtcg 228  Q
    ||||||    
T  40691751 acgtcg 40691746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 12692674 - 12692517
Alignment:
Q  181 cctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgcc---gttcatcagcttcatc---cgggtgaaccgcacactccttgctgagt 274  Q
    |||| |||||||||||||||||||||| |||| |||||||||||| || |   |||||| | |||||||   ||  ||||||||||||| ||  | ||||    
T  12692674 cctcaagtactgtactgaccaaagatcgagaacatggttctcacgccgtcttcgttcatgatcttcatcgtccgtctgaaccgcacacttctgaccgagt 12692575  T
Q  275 cgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagtt 334  Q
    || |||| ||| |||||||||||||| |||||| ||||  ||||||||| ||||||||||    
T  12692574 cggtcgacggacgttgatactcaacatcatccatcctc--tgtgtctctgtagttgagtt 12692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 7631185 - 7631070
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||||||| |||||| |||||| | |  || || || ||||||||||| ||||| ||| ||| || ||||||||| ||||||| |||||||||    
T  7631185 gatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaacata 7631086  T
Q  150 tctgaccaacgaagcg 165  Q
    |||||| || ||||||    
T  7631085 tctgacaaaagaagcg 7631070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 34952742 - 34952651
Alignment:
Q  47 acagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatt 138  Q
    ||||||||| ||||||||| |||||||||||||| || | ||||||||| ||||||| ||||||  || | | |||||||||||| ||||||    
T  34952742 acagatcaattaaattaatatcttcatatggtgcatctatgagtgccctgatctctttgtagtttctgagccggatcaaacttttttgaatt 34952651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 6369561 - 6369415
Alignment:
Q  82 tccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||| || |||||| ||||||||| |||  | || | |||||||||||| ||||||  ||||||| |||||||||| ||| ||| ||||||| || ||     
T  6369561 tccagcagagccctagtctcttcgttgtttataggccggatcaaacttttctgaattaattcaacagatctgaccaatgaaacgttcaactcggtcagtt 6369462  T
Q  182 ctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    || ||||| ||||||| ||||| ||  |||| || ||||||||||||    
T  6369461 ctttagtattgtactgcccaaatatggagaacatagttctcacgtcg 6369415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 45658366 - 45658276
Alignment:
Q  94 ctaatctcttcgtagttcttgggtcagatcaaacttttatgaa-tttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcct 183  Q
    ||||| |||||||||||| ||| || |  |||||||||  ||| |||||||| || |||| ||||||||||||||||||||||||||||||    
T  45658366 ctaatttcttcgtagttcctggttcggtgcaaacttttcagaaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcct 45658276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 37397130 - 37397025
Alignment:
Q  118 cagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatgg 217  Q
    |||| ||||||||| ||||||| |||||||||| | ||||| ||||||||||||| ||| | |||| ||     ||||| |||||| |||||||| ||||    
T  37397130 cagaacaaacttttctgaatttcttcaacatatttaaccaaagaagcgtccaacttgattgatccttta-----gtactaaccaaatatcaagaacatgg 37397036  T
Q  218 ttctcacgtcg 228  Q
    |||||| ||||    
T  37397035 ttctcaggtcg 37397025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 12692745 - 12692685
Alignment:
Q  51 atcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttc 111  Q
    |||| |||||||||| ||||| | |||||| ||||  |||||||| |||||||||||||||    
T  12692745 atcatctaaattaatgtcttcgtgtggtgcatccattagtgccctgatctcttcgtagttc 12692685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 121 - 444
Target Start/End: Complemental strand, 51327773 - 51327448
Alignment:
Q  121 atcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttc 220  Q
    ||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||  |||| |||||||    
T  51327773 atcaaactttgtcgaatatgttcaacatatctgaccaacgaagcgtccaactcgatcggacctctagtactaaactgaccaaagatggagaacatggttc 51327674  T
Q  221 tca---cgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgt 317  Q
    |||   ||||| ||||||| ||||||||||||||||||||||||||||| | ||||||| |||| ||| || |||||| ||||||||||| | || ||||    
T  51327673 tcaagtcgtcgtcgttcatgagcttcatccgggtgaaccgcacactcctggatgagtcggtcgaaggacgtcgatacttaacaccatccatcatctgtgt 51327574  T
Q  318 gtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctcc 417  Q
    |||||| |||||||||| | |||||||| ||| |||||||| ||||| | | ||||||| ||||| | ||  ||||||||| | ||||  |||||| |||    
T  51327573 gtctctgtagttgagtttgaggttgatttgattcagctgactcttcaacccggagagggtgacatcattgcaaatcctgaacatatgggatggttt-tcc 51327475  T
Q  418 ccgttgtagtaaactgtaactagcttg 444  Q
    |||||||||||||| | | ||||||||    
T  51327474 ccgttgtagtaaaccgcagctagcttg 51327448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 121 - 444
Target Start/End: Complemental strand, 10493648 - 10493326
Alignment:
Q  121 atcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttc 220  Q
    ||||||||||  ||||| ||||||||| |||||||||||||||||  |||||| ||||| ||||||||||||||| ||||||||||| |||| |||||||    
T  10493648 atcaaactttgttgaatatgttcaacagatctgaccaacgaagcgcgcaactcaatcggccctctagtactgtacagaccaaagatcgagaacatggttc 10493549  T
Q  221 tcacgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtc 320  Q
    |||| ||| |||||||  | ||||| ||||||||||||||||| |    ||||||| |||| ||| || ||||||||||||||||||||| |||||||||    
T  10493548 tcacatcgtcgttcatgggattcattcgggtgaaccgcacacttc-caatgagtcggtcgacggacgtcgatactcaacaccatccacccaccgtgtgtc 10493450  T
Q  321 tctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccg 420  Q
    ||| |||||||||| | |||||||| ||| |||||||| ||||| | || |||| | ||||| |||| ||||||| || ||||   ||| |||  || ||    
T  10493449 tctgtagttgagttcgaggttgatttgattcagctgactcttcaacccaaagagtgtgacatcagtgggaatcctaaacagattagttgattttccctcg 10493350  T
Q  421 ttgtagtaaactgtaactagcttg 444  Q
    || |||||||||| ||||||||||    
T  10493349 ttatagtaaactgcaactagcttg 10493326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 46 - 444
Target Start/End: Original strand, 12718699 - 12719100
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    |||| |||| |||||||||| ||||| | |||| | ||||  |||  ||| |||||||| |||||  ||||   ||||| |||||  ||||| |||||||    
T  12718699 cacaaatcatctaaattaatgtcttcgtgtggttcatccattagtttcctgatctcttcatagtttctgggctggatcatactttgttgaatatgttcaa 12718798  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgcc---gttcatcagctt 242  Q
    |  |||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||| ||||||||||| ||  |   |||||| |||||    
T  12718799 cggatcttaccaacgaagcgtccaactcgatcggccctctaatactgtactgaccaaagattgagaacatggttctcacatcctcctcgttcatgagctt 12718898  T
Q  243 catccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttg 342  Q
    ||||| | |||||||||||||||   | |||||||||||  || || ||||||||| |||||||||| || | |||||||| |||||||||| | |||||    
T  12718899 catccagatgaaccgcacactcccgacagagtcgatcgacagacgtcgatactcaataccatccaccatctgcgtgtctctgtagttgagttcgaggttg 12718998  T
Q  343 attcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagct 442  Q
    ||| |||  ||||||||||||| | | ||||||| || || |||| || ||||||| ||||||  ||||||| |||||||||||| ||||| ||||||||    
T  12718999 atttgatttagctgacccttcaacccggagagggtgatatcagtgggattcctgaacagatggggtggtttccccccgttgtagttaactgcaactagct 12719098  T
Q  443 tg 444  Q
    ||    
T  12719099 tg 12719100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 75 - 444
Target Start/End: Complemental strand, 25213616 - 25213241
Alignment:
Q  75 tggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaa-acttttatgaatttgttcaacatatctgaccaacgaagcgtccaactc 173  Q
    ||||||||| || |||||||| |||||||||||||| ||||| |  |||||   |||| |||||||  |||||| |||||||||||||||||||||||||    
T  25213616 tggtgcgtcaagaagtgccctgatctcttcgtagtttttgggacgaatcaatttttttttgaatttcctcaacagatctgaccaacgaagcgtccaactc 25213517  T
Q  174 gatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca----cgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgc 269  Q
    ||||||||||||||||||||||| |||||||||  |||| ||||||||||    ||||  | ||||| |||||||||||| |||||  |||||| |  |     
T  25213516 gatcggtcctctagtactgtactaaccaaagatagagaacatggttctcaacatcgtcttctttcatgagcttcatccggctgaacaacacacttccaga 25213417  T
Q  270 tgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcaca 369  Q
    ||||||| ||||||||  | ||||||||||| | | |||||||||||||||| | | |||||||||| |||||||| |||  ||||||||||||||| |     
T  25213416 tgagtcggtcgatggacatcgatactcaacaacgttcaccctccgtgtgtctatgtggttgagttggtggttgatttgatttagctgacccttcagcccg 25213317  T
Q  370 gagagggcgacataagtgtgaatcctgaatagatggattggtttctccc-cgttgtagtaaactgtaactagcttg 444  Q
    ||||||| |||||  ||| |||||||||| | ||||  ||||||| ||| ||||| | ||||||| | ||||||||    
T  25213316 gagagggtgacatccgtgcgaatcctgaacatatggggtggtttcccccacgttgaattaaactgcagctagcttg 25213241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 241 - 444
Target Start/End: Complemental strand, 24629031 - 24628829
Alignment:
Q  241 ttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggt 340  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||||||| ||||||||||| |||||||||| | |||    
T  24629031 ttcatccaggtgaaccgcacactcctggctgagtcgatcgacggacgtcgatactcaacaccatccacccttcgtgtgtctctgtagttgagtttgaggt 24628932  T
Q  341 tgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactag 440  Q
    ||||| ||| |||||||| ||||| | |  |||||| ||||| | ||||||||||||| ||||||  || |||  |||||||||||||||||| ||||||    
T  24628931 tgatttgattcagctgactcttcaacccgaagagggtgacatcattgtgaatcctgaacagatgg-gtgattttcccccgttgtagtaaactgcaactag 24628833  T
Q  441 cttg 444  Q
    ||||    
T  24628832 cttg 24628829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 149 - 405
Target Start/End: Original strand, 27025059 - 27025318
Alignment:
Q  149 atctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgt---tcatcagcttcat 245  Q
    |||||||||||||||| ||||||| ||| |  ||||| ||||| ||||||| ||||||| |||| ||||||||||||||| |||   |||| ||||||||    
T  27025059 atctgaccaacgaagcatccaacttgattgtccctcttgtactatactgacaaaagatcgagaacatggttctcacgtcgtcgtcgttcatgagcttcat 27025158  T
Q  246 ccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgatt 345  Q
    |||  ||||||||||||| ||  |||||||| ||||| || || ||||||||||||||| ||| ||| |||||||||| ||||||||||||  || ||||    
T  27025159 ccgactgaaccgcacacttctaactgagtcggtcgatagacgtcgatactcaacaccatacactctctgtgtgtctctgtagttgagttggatgtagatt 27025258  T
Q  346 cgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
      |||||  ||| | |||| | ||||||||| ||||| |||| |||||||||| ||||||    
T  27025259 taatccatttgagctttcaacccagagagggtgacatcagtgcgaatcctgaacagatgg 27025318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 144 - 405
Target Start/End: Original strand, 27036295 - 27036559
Alignment:
Q  144 aacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgt---tcatcagc 240  Q
    |||| |||||||||||||||||||||||| ||| |  ||||| ||||| ||||||| ||||||| |||| ||||||||||||||| |||   |||| |||    
T  27036295 aacagatctgaccaacgaagcgtccaacttgattgtccctcttgtactatactgacaaaagatcgagaacatggttctcacgtcgtcgtcgttcatgagc 27036394  T
Q  241 ttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggt 340  Q
    ||||||||  ||||||||||||| |   |||||||| ||||| || |  ||||||||||||||| ||| |||||||||||||| ||||||||||||  ||    
T  27036395 ttcatccgactgaaccgcacacttccaactgagtcggtcgatagacgccgatactcaacaccatacactctccgtgtgtctctgtagttgagttggatgt 27036494  T
Q  341 tgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
     ||||  |||||  ||| | |||| | | ||||||| ||||| ||||  ||||||||| ||||||    
T  27036495 agatttaatccatttgagctttcaacccggagagggtgacatcagtgcaaatcctgaacagatgg 27036559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 91 - 382
Target Start/End: Complemental strand, 21449562 - 21449271
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    |||| |||||||||||||||| |||  | |  |||||||||  ||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||    
T  21449562 gcccgaatctcttcgtagttcctggtccggtgcaaacttttcggaatttgttcaacatatctaaccaacgaaacgtccaactcgatcggtcatcttgtac 21449463  T
Q  191 tgtactgaccaaagatcaagaatatggttctcacgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttg 290  Q
    ||| |||||||||||   |||| ||||||| ||||||| ||||| | || ||||||||| |||| || | |   |  |||||||||  | |||||  | |    
T  21449462 tgtgctgaccaaagaaagagaacatggttcgcacgtcgtcgttcttgagtttcatccggctgaagcgaagagatccggctgagtcggacaatggacatcg 21449363  T
Q  291 atactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacat 382  Q
    ||| ||||| ||  |||||||||  |||||| | | ||||||||| ||||||||| |||||| || | |||||||| ||||||||| |||||    
T  21449362 atattcaactccgaccaccctcctcgtgtctttgtggttgagttgtcggttgatttgatccatctcatccttcagctcagagagggtgacat 21449271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 382
Target Start/End: Original strand, 9331745 - 9332048
Alignment:
Q  82 tccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||| |||||||| ||||| | ||||||| |||| | ||||||||||||  |||||||||||||||| || ||||||||||| |||||||||||| |||    
T  9331745 tccagtagtgccctgatctccttgtagttcctgggccggatcaaactttttagaatttgttcaacatacctaaccaacgaagcatccaactcgatcagtc 9331844  T
Q  182 ctctagtactgtactgaccaaagatcaagaatatggttctca---cgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgat 278  Q
    || ||||| ||| |||||||||||   ||||  ||||| |||   ||||  ||||  | || ||||||||| ||| ||| |     |  |||||||||      
T  9331845 ctttagtattgtgctgaccaaagacagagaacgtggttatcatgtcgtcatcgtttgtgagtttcatccggttgagccgaagtgatccggctgagtcgga 9331944  T
Q  279 cgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcg 378  Q
    | |||||  | |||| ||||||||  |||||||||  |||||||| ||||||||||| ||||||||| ||||||||||  |||||||| | ||||||| |    
T  9331945 caatggacatcgatattcaacaccgaccaccctcctcgtgtctctgtagttgagttgacggttgatttgatccagctggtccttcagcccggagagggtg 9332044  T
Q  379 acat 382  Q
    ||||    
T  9332045 acat 9332048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 18877259 - 18877396
Alignment:
Q  91 gccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtac 190  Q
    ||||| ||||||||||||||| |||| |||  |||||||||  ||||||||||| || |||| ||| | ||||||||||||||||||||||||||||||     
T  18877259 gccctgatctcttcgtagttcctgggccagtgcaaacttttcagaatttgttcagcagatctaacctatgaagcgtccaactcgatcggtcctctagtat 18877358  T
Q  191 tgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| |||||||||||   |||| |||||||| ||||||    
T  18877359 tgtgctgaccaaagacagagaacatggttctgacgtcg 18877396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 21978787 - 21978656
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||| |||  |||||||||  ||||||||||| || |||| ||||||||||||||||||||||||| || ||||||| ||| ||    
T  21978787 atctcttcgtagttcctgggccagtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcgatcttctagtattgtgct 21978688  T
Q  197 gaccaaagatcaagaatatggttctcacgtcg 228  Q
    || ||||||   |||| |||||||||||||||    
T  21978687 gaacaaagacagagaacatggttctcacgtcg 21978656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 22001218 - 22001087
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||| |||  |||||||||  ||||||||||| || |||| ||||||||||||||||||||||||| || ||||||| ||| ||    
T  22001218 atctcttcgtagttcctgggccagtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcgatcttctagtattgtgct 22001119  T
Q  197 gaccaaagatcaagaatatggttctcacgtcg 228  Q
    || ||||||   |||| |||||||||||||||    
T  22001118 gaacaaagacagagaacatggttctcacgtcg 22001087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 8485298 - 8485201
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttc 220  Q
    |||||||||  |||||||||||||| |||| ||||||||||||||||||| ||| |||||||| ||||||| |||||||||||  ||||| |||||||    
T  8485298 caaacttttcagaatttgttcaacagatctaaccaacgaagcgtccaacttgattggtcctcttgtactgtgctgaccaaagacaaagaacatggttc 8485201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 3940320 - 3940215
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||||| || |||| || |||||||| |||||||||||||||||||| ||||||| |||||||||||   |||| ||||||| |    
T  3940320 caaacttttcagaatttgttcagcagatctaacaaacgaagcatccaactcgatcggtcctcttgtactgtgctgaccaaagacagagaacatggttcgc 3940221  T
Q  223 acgtcg 228  Q
    ||||||    
T  3940220 acgtcg 3940215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 44206608 - 44206479
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| |||||| ||||||||||||||||||||||||| ||||| | ||    
T  44206608 atctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacaaagcgtccaactcgatcggtcctcttgtactatgct 44206509  T
Q  197 gaccaaagatcaagaatatggttctcacgt 226  Q
    |||||||||   |||| ||||||| |||||    
T  44206508 gaccaaagacagagaacatggttcgcacgt 44206479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 47373640 - 47373535
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  |||||| |||| || |||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||   |||| ||||||| |    
T  47373640 caaacttttcagaattttttcagcagatctaacccacgaagcgtccaactcgatcggtcctcttgtactgtgctgaccaaagacagagaacatggttcgc 47373541  T
Q  223 acgtcg 228  Q
    ||||||    
T  47373540 acgtcg 47373535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 433
Target Start/End: Complemental strand, 23333624 - 23333481
Alignment:
Q  290 gatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtg 389  Q
    ||||||||||||||||||||||||  || ||| | |||||||||| | |||| ||| ||| ||||| || ||||| |  |||||||| ||||| |||| |    
T  23333624 gatactcaacaccatccaccctccacgtatctttgtagttgagttcgaggttaatttgattcagctcactcttcaacctagagagggtgacatcagtggg 23333525  T
Q  390 aatcctgaatagatggattggtttctccccgttgtagtaaactg 433  Q
     |||| ||| | ||||  ||||||||||||||||||||||||||    
T  23333524 catcccgaacaaatggggtggtttctccccgttgtagtaaactg 23333481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 41973542 - 41973433
Alignment:
Q  82 tccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||| || |||| |||||||||||||||| |||  | |  |||| ||||  ||||||||||| || |||| ||||||||||| ||||||||||||||||    
T  41973542 tccagcagagcccgaatctcttcgtagttcctggtccggtgcaaaattttcagaatttgttcagcagatctaaccaacgaagcttccaactcgatcggtc 41973443  T
Q  182 ctctagtact 191  Q
    |||| |||||    
T  41973442 ctcttgtact 41973433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 51135550 - 51135472
Alignment:
Q  147 atatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacg 225  Q
    |||||| ||||  |||| |||||||||||| |||||| ||| ||||||||||||||  |||||||| ||||||||||||    
T  51135550 atatctaaccagggaagtgtccaactcgattggtcctttagaactgtactgaccaactatcaagaacatggttctcacg 51135472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 48063458 - 48063546
Alignment:
Q  97 atctcttcgtagttcttgggtcagat-caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctct 185  Q
    ||||||||||||||| ||| || ||| |||||||||  |||||| |||| || |||| ||||||||||||||||||| ||||||||||||    
T  48063458 atctcttcgtagttcctgg-tccgatgcaaacttttcagaattttttcagcagatctaaccaacgaagcgtccaacttgatcggtcctct 48063546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 49326213 - 49326077
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  ||||||||   ||||||||||| || || | ||||||||| |||||| |||||||| |||||| ||||||| ||    
T  49326213 atctcttcgtagttcctggtccggtgcaaactttccagaatttgttcagcagatataaccaacgaaacgtccagctcgatcgatcctcttgtactgtgct 49326114  T
Q  197 gaccaaagatcaagaatatggttctcacgtcgccgtt 233  Q
     ||||||||   |||| ||||||| ||||||| ||||    
T  49326113 aaccaaagacagagaacatggttcgcacgtcgtcgtt 49326077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 23333709 - 23333638
Alignment:
Q  196 tgaccaaagatcaagaatatggttctca---cgtcgccgttcatcagcttcatccgggtgaaccgcacactc 264  Q
    |||||||||||| |||| |||||||| |   ||||| ||||||| ||||||||| || ||||||||||||||    
T  23333709 tgaccaaagatcgagaacatggttctaatgtcgtcgtcgttcatgagcttcatctggctgaaccgcacactc 23333638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 4812186 - 4812130
Alignment:
Q  277 atcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagt 333  Q
    |||||||||||| ||||| ||||||| |||| ||||| ||||||||| | |||||||    
T  4812186 atcgatggatgtcgatacccaacaccctccatcctccttgtgtctctgtggttgagt 4812130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 41973331 - 41973239
Alignment:
Q  290 gatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacat 382  Q
    |||| ||||| ||| |||||||||   ||||| | | ||||||||| ||||||||| ||||||||| | |||||| | | |||||||||||||    
T  41973331 gatattcaactccaaccaccctcctcatgtctttgtggttgagttgacggttgatttgatccagctcatccttcaacccggagagggcgacat 41973239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 95 - 432
Target Start/End: Complemental strand, 426189 - 425849
Alignment:
Q  95 taatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgta 194  Q
    |||| ||||||||||||||||| | |||||||||||  ||||| ||||||||| |||||||||||||||  |||||||||||||  |||| |||||| ||    
T  426189 taatgtcttcgtagttcttgggccggatcaaactttgttgaatatgttcaacaaatctgaccaacgaagaatccaactcgatcgaccctccagtacttta 426090  T
Q  195 ctgaccaaagatcaagaatatggttctcacgtcgcc---gttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttga 291  Q
    || |||||||||| |||| |||||||| || ||| |   |||||| |||||||||||| |||||||||||||||   ||||||| ||||| ||| || ||    
T  426089 ctaaccaaagatcgagaacatggttctaacttcgtcatcgttcatgagcttcatccggctgaaccgcacactcccgactgagtcaatcgacggacgtcga 425990  T
Q  292 tactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaa 391  Q
    ||||||||||||||||||||| |||||||| | || ||||||| | ||| |||| |||  ||||||||||||| | | ||||||| ||||| |||| |||    
T  425989 tactcaacaccatccaccctctgtgtgtctttgtatttgagttcgaggtggatttgatttagctgacccttcaacccggagagggtgacatcagtgggaa 425890  T
Q  392 tcctgaatagatggattggtttctccccgttgtagtaaact 432  Q
    ||||||| ||||||  ||||||  |||||||||| ||||||    
T  425889 tcctgaacagatggggtggttttcccccgttgtattaaact 425849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 57 - 405
Target Start/End: Original strand, 34550331 - 34550682
Alignment:
Q  57 taaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgacc 156  Q
    ||||||||| | ||| | ||| ||||||||||||||||| ||||||||||||||| ||||   |||| ||||||| ||||||||||||||| || |||||    
T  34550331 taaattaatgtattcgtgtggggcgtccaggagtgccctgatctcttcgtagttcctgggcaggatcgaacttttttgaatttgttcaacaaatttgacc 34550430  T
Q  157 aacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca---cgtcgccgttcatcagcttcatccgggtga 253  Q
    |||||||||||||||||||| | |||||||||| |||| || ||||||||  |||| ||||||||||   ||||| ||||||| || ||||||||| | |    
T  34550431 aacgaagcgtccaactcgattgatcctctagtattgtattggccaaagattgagaacatggttctcacatcgtcgtcgttcatgagattcatccggctaa 34550530  T
Q  254 accgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccag 353  Q
    ||||||||||||  |||||||||  | ||||  || ||||||||||||| |||| ||||||||||||| | | ||||| ||| ||||||||| ||| |||    
T  34550531 accgcacactccgggctgagtcggacaatgggcgtcgatactcaacaccgtccaacctccgtgtgtctatgttgttgacttgtcggttgatttgatgcag 34550630  T
Q  354 ctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
    ||||||||||| | |  |||||   |||| | ||||||||||||||| ||||    
T  34550631 ctgacccttcaacccgtagaggataacatcaatgtgaatcctgaataaatgg 34550682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 46 - 321
Target Start/End: Complemental strand, 28639074 - 28638796
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||||| ||||| |||| ||||| | |||||||||||| || ||||| |||||||||||||||||| | ||||||||| |||||||||||| |||||    
T  28639074 cacagatcagctaaactaatgtcttcgtctggtgcgtccagcagagccctgatctcttcgtagttcttgtgccagatcaaatttttatgaatttcttcaa 28638975  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgcc---gttcatcagctt 242  Q
    || || ||||||||||||||||||| ||||| |||||| ||||||||||||  |||||||||||  | |||||| |||||||| |   ||||   || ||    
T  28638974 cacatatgaccaacgaagcgtccaaatcgattggtcctttagtactgtacttgccaaagatcaatgagatggttttcacgtcgtcattgttcccgagatt 28638875  T
Q  243 catccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtct 321  Q
    ||| ||| |||||| |||| | |  ||||||||| || ||| | ||  ||||| ||||||||||||||||| |||||||    
T  28638874 cattcggctgaaccacacagttccggctgagtcggtcaatgtacgtcaatactgaacaccatccaccctccttgtgtct 28638796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 46 - 405
Target Start/End: Complemental strand, 7563510 - 7563148
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||||| |||||||||||||||| | |||||  || ||||||||||| |||||||||||| || |||||| | ||||||| |    ||||||||||     
T  7563510 cacagatcatctaaattaatttcttcgtctggtggttctaggagtgccctgatctcttcgtagatcatgggtcggttcaaactatccataatttgttcag 7563411  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgcc---gttcatcagctt 242  Q
    || |||| ||||||||| ||||||||||||||||||||||| || |||  ||||||||||   |||| ||||||||| ||||| |   |||| | || ||    
T  7563410 cagatctaaccaacgaaacgtccaactcgatcggtcctctaatattgtgttgaccaaagacagagaacatggttctcgcgtcgtcttggttcgtgagttt 7563311  T
Q  243 catccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttg 342  Q
    ||||||| |||| || | |   |   ||||||||  | |||||  | |||| ||||||||  |||||||||  |||||||| | ||||||||| ||||||    
T  7563310 catccggctgaagcgaagagatccgactgagtcggacaatggacatcgatattcaacaccgaccaccctcctcgtgtctctgtggttgagttgacggttg 7563211  T
Q  343 attcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
    ||| ||||||||| | |||||||| | ||||||| |||||   |||||||||| || ||||||    
T  7563210 atttgatccagctcatccttcagcccggagagggtgacatcgttgtgaatcctaaacagatgg 7563148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 430
Target Start/End: Complemental strand, 48181514 - 48181122
Alignment:
Q  41 cataccacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttg 140  Q
    |||| |||| |||| ||||| |||||||||| | |||| | | ||| || ||||| ||||||||||| ||| ||||||||||||||||||| |||||||     
T  48181514 catatcacatatcagctaaactaatttcttcgtctggttcattcagcagagccctgatctcttcgtaattcatgggtcagatcaaacttttctgaatttc 48181415  T
Q  141 ttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacg---tcgccgttcatc 237  Q
    ||||| | ||||||| | || ||||||||||||||||| |||| ||||| |||||| |||||| ||| |||| |||||||| |||   ||| ||||| |     
T  48181414 ttcaataaatctgacaaccgtagcgtccaactcgatcgatcctttagtattgtactaaccaaatatcgagaacatggttcttacgtcatcggcgttccta 48181315  T
Q  238 agcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggc 337  Q
    ||||||||||   |||||| |||  |||| ||||||||  | |||| |  |  |||||||||| ||||| | |||| | |||||   | ||||||||| |    
T  48181314 agcttcatccaattgaaccacacggtcctggctgagtctgttgatgaacctcaatactcaacatcatcccctctccttatgtcttcgttgttgagttgac 48181215  T
Q  338 ggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaa 430  Q
    ||| |||| |||||| |||| |||||| |  ||||||   ||||| ||||  |||| |||| | ||||  |||||| ||||||||||||||||    
T  48181214 ggtagatttgatccaactgatccttcaacctagagagcatgacatcagtgcaaatcttgaacaaatggggtggtttttccccgttgtagtaaa 48181122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 30517283 - 30517105
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||| |||| || |||| |||| | ||||| || ||| | ||||||||||||||| |||||| | ||||| ||||  ||||||||||| || |    
T  30517283 gatcacctaaactaatatcgtcatctggtccctccagcagagccgtgatctcttcgtagttcctgggtcggttcaaatttttcagaatttgttcagcaga 30517184  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    ||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||   |||| |||||||||||||||    
T  30517183 tctaaccaatgaagcgtccaactcgatcgatcctctagtactgtattgaccaaagacatagaagatggttctcacgtcg 30517105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 432
Target Start/End: Original strand, 41367920 - 41368127
Alignment:
Q  224 cgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctct 323  Q
    ||||| ||||||| || |||||||| ||||||||||||| ||| || |||| | |||||| | |  ||||| |||||||||| ||||| |||||||||||    
T  41367920 cgtcgtcgttcatgagtttcatccgagtgaaccgcacacccctagcagagttggtcgatgaacgacgatacacaacaccatctacccttcgtgtgtctct 41368019  T
Q  324 ttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttg 423  Q
     |||||||||| | ||||||||  || ||||| || ||||| | ||||||||| ||||| | || ||||| |||||||||||  ||||||| ||| ||||    
T  41368020 gtagttgagttcgaggttgattttattcagctaactcttcaacccagagagggtgacatcattgcgaatcatgaatagatggggtggtttc-ccctgttg 41368118  T
Q  424 tagtaaact 432  Q
    |||||||||    
T  41368119 tagtaaact 41368127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 18277751 - 18277859
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| ||| || |  |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||| ||    
T  18277751 atctcttcgtagttcctggttcggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgct 18277850  T
Q  197 gaccaaaga 205  Q
    |||||||||    
T  18277851 gaccaaaga 18277859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 22334355 - 22334224
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||| ||    
T  22334355 atctcttcgtagttcatggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgct 22334256  T
Q  197 gaccaaagatcaagaatatggttctcacgtcg 228  Q
    |||||||||   |||| ||||||| |||||||    
T  22334255 gaccaaagacatagaacatggttcgcacgtcg 22334224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 17384763 - 17384671
Alignment:
Q  134 gaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtc 227  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||   |||| ||||||||||||||    
T  17384763 gaatttgttcaacatatctaaccaacgaagcgtccaactcggtcggtcctctagtactgtgctgacc-aagacagagaacatggttctcacgtc 17384671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 7198892 - 7198772
Alignment:
Q  134 gaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgtt 233  Q
    ||||||||||| || |||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||||  |||| ||||||| ||||||| ||||    
T  7198892 gaatttgttcagcagatctaaccaacgaagcgtccaactcgattggtcctcttgtactgtgcagaccaaagatagagaaaatggttcgcacgtcgtcgtt 7198793  T
Q  234 catcagcttcatccgggtgaa 254  Q
    | | || ||||||||| ||||    
T  7198792 cttgagtttcatccggctgaa 7198772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 142 - 448
Target Start/End: Original strand, 11355413 - 11355722
Alignment:
Q  142 tcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgttcatc---a 238  Q
    ||||||||||||| ||| |||||||| || ||||||| |||| || || |||| |||||||| ||| ||||||||||||||| ||||  |||  |    |    
T  11355413 tcaacatatctgatcaatgaagcgtcaaattcgatcgatcctttactattgtattgaccaaatatcgagaatatggttctcatgtcgttgttgtttttga 11355512  T
Q  239 gcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcg 338  Q
    ||||||||||| ||||||| ||| |     | || |||||||||||| || ||||||||||| |||||| ||||| ||| ||||| | ||||||||| ||    
T  11355513 gcttcatccggctgaaccgaacagtttcgacagaatcgatcgatggacgtcgatactcaacatcatccatcctccttgtatctctgtggttgagttgacg 11355612  T
Q  339 gttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaact 438  Q
    ||||||| |||||||  || ||||||   | || || |  | || |||||||||| |||| ||||||  || ||| |||  |||||||||||||| ||||    
T  11355613 gttgatttgatccaggcgatccttcaattcggatagcgttatatcagtgtgaatcatgaacagatggggtgatttttccatgttgtagtaaactgcaact 11355712  T
Q  439 agcttgatgt 448  Q
    |||| |||||    
T  11355713 agctagatgt 11355722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 4852580 - 4852726
Alignment:
Q  82 tccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||| || |||| |||||||||||||||| |||  | |  |||||||||  ||||||||| | || |||| ||||||||||||||||||||||||| ||    
T  4852580 tccagcagagcccgaatctcttcgtagttcatggtccggtgcaaacttttcagaatttgtttagcagatctaaccaacgaagcgtccaactcgatcgatc 4852679  T
Q  182 ctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    |||| ||| ||| |||||||||||   |||| |||||||||||||||    
T  4852680 ctcttgtaatgtgctgaccaaagacagagaacatggttctcacgtcg 4852726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 382
Target Start/End: Complemental strand, 10222115 - 10221853
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  | ||||||||| || |||| |||||| ||||||||||||||||| ||||||| ||||||| |||||||||||   |||| ||||||| |    
T  10222115 caaactttttagtatttgttcatcagatctaaccaacaaagcgtccaactcgatcagtcctcttgtactgtgctgaccaaagacagagaacatggttcgc 10222016  T
Q  223 acgtcgc---cgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgt 319  Q
    |||||||   ||||| | || ||||||||| |||| || | |   |  |||||||||  | |||||  | |||| ||||| ||  |||||||||  ||||    
T  10222015 acgtcgccgtcgttcttgagtttcatccggctgaagcgaagagatccggctgagtcggacaatggacatcgatattcaaccccgaccaccctcctcgtgt 10221916  T
Q  320 ctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacat 382  Q
    || | | ||||||||| ||||||||| ||||||||| | |||||||| | ||||||| |||||    
T  10221915 ctttgtggttgagttgacggttgatttgatccagctcatccttcagcccggagagggtgacat 10221853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 39599431 - 39599554
Alignment:
Q  82 tccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||| || |||| |||||||||||||||| |||  |||  |||| ||||  |||||||||||||| |||| |||||||||||||||||||| || ||||    
T  39599431 tccagcagagcccgaatctcttcgtagttcctggtccagtgcaaaattttcagaatttgttcaacagatctaaccaacgaagcgtccaactctattggtc 39599530  T
Q  182 ctctagtactgtactgaccaaaga 205  Q
    || | ||||||| |||||||||||    
T  39599531 cttttgtactgtgctgaccaaaga 39599554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 10311557 - 10311465
Alignment:
Q  135 aatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtc 227  Q
    |||||||||| || |||| ||||||||||| |||||||||||||||||||| |||||||  ||||||||||  ||||| ||||||| ||||||    
T  10311557 aatttgttcagcagatctaaccaacgaagcatccaactcgatcggtcctcttgtactgtgttgaccaaagacaaagaacatggttcacacgtc 10311465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 5748723 - 5748592
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctc 222  Q
    |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||| | |||| |||| |   |||| ||||||| |    
T  5748723 caaacttttccgaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctcttgtactatgctgaacaaacacgtagaacatggttcgc 5748624  T
Q  223 acgtcgccgttcatcagcttcatccgggtgaa 254  Q
    || ||| ||||| | || ||||||||| ||||    
T  5748623 acatcgtcgttcttgagtttcatccggctgaa 5748592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 35988877 - 35988796
Alignment:
Q  118 cagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgac 199  Q
    |||||||||||||| ||||||| |||||||||||| |||||| || | ||||||| ||||| |||| || ||||||||||||    
T  35988877 cagatcaaacttttctgaatttcttcaacatatctaaccaacaaaacatccaacttgatcgatcctttaatactgtactgac 35988796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 333
Target Start/End: Original strand, 43074978 - 43075159
Alignment:
Q  154 accaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtc--gccgttcatcagcttcatccgggt 251  Q
    ||||| ||||||||||||||||| |||| | | | ||| ||||||| ||| ||| |||| ||||||||||||||  |  |||||| ||||||||  ||||    
T  43074978 accaaggaagcgtccaactcgattggtcatttcgaactatactgactaaatatcgagaacatggttctcacgtcgtgttgttcatgagcttcatatgggt 43075077  T
Q  252 gaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagt 333  Q
    |||| | |  || || ||||||||||| |||||| || |||||  ||||||  ||||||||  ||||||||| | |||||||    
T  43075078 gaactggatgcttctagctgagtcgattgatggacgtcgatacataacaccgcccaccctctttgtgtctctgtggttgagt 43075159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 15248432 - 15248507
Alignment:
Q  280 gatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagct 355  Q
    ||||||||| ||||||||||| |||||||||||| ||| ||||| | ||||| ||| ||||||||| |||| ||||    
T  15248432 gatggatgtcgatactcaacatcatccaccctccttgtatctctgtggttgaattgacggttgatttgatctagct 15248507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 30517025 - 30516925
Alignment:
Q  305 ccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatg 404  Q
    |||||||||  |||||||| | ||||||||||| ||||||| ||||||||||| |||| |||   ||||||| |||||   |||||||||| || |||||    
T  30517025 ccaccctcctcgtgtctctgtggttgagttggcagttgatttgatccagctgatcctttagcctggagagggtgacatcgttgtgaatcctaaacagatg 30516926  T
Q  405 g 405  Q
    |    
T  30516925 g 30516925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 15499936 - 15500019
Alignment:
Q  281 atggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttca 364  Q
    ||||| || ||||||||||||| ||||||||||  |||||| | | ||||||||| ||||||||| ||| ||||| | ||||||    
T  15499936 atggacgtcgatactcaacaccgtccaccctcctagtgtctttgtggttgagttgacggttgatttgatgcagctaatccttca 15500019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 7492947 - 7492894
Alignment:
Q  270 tgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctct 323  Q
    ||||| |||||||| |||||||||||||||||  |||| ||||| |||||||||    
T  7492947 tgagttgatcgatgaatgttgatactcaacactgtccatcctccttgtgtctct 7492894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 15248254 - 15248286
Alignment:
Q  105 gtagttcttgggtcagatcaaacttttatgaat 137  Q
    ||||||||||| |||||||||||||||||||||    
T  15248254 gtagttcttggttcagatcaaacttttatgaat 15248286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 116; Significance: 8e-59; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 54820 - 55081
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||||| |||||||||| ||||| | |||||| | ||  |||||||| ||||||||||||||| || ||| |||||||||||| |||||||||||||    
T  54820 cacagatcatctaaattaatgtcttcgtgtggtgcattcattagtgccctgatctcttcgtagttcctgcgtcggatcaaacttttctgaatttgttcaa 54919  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgt---tcatcagctt 242  Q
    ||||||||||||| ||||||||||||||||| |  |||||| ||||||||||||||||||||||||| ||||| ||||||||| |||   |||| ||||     
T  54920 catatctgaccaatgaagcgtccaactcgattgaccctctattactgtactgaccaaagatcaagaacatggtcctcacgtcgtcgtcgctcatgagcta 55019  T
Q  243 catccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccat 304  Q
     |||||| || ||| ||||||||  | ||||||| ||||||||  |||||||||||||||||    
T  55020 tatccggctggaccacacactcccggttgagtcggtcgatggacattgatactcaacaccat 55081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 138 - 304
Target Start/End: Complemental strand, 87132 - 86963
Alignment:
Q  138 ttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac---gtcgccgttc 234  Q
    |||||||||| |||||||||| ||||||||||||| ||| |  ||||||||||||||||||||||| |||||||| |||||||||||   |||| |||||    
T  87132 ttgttcaacacatctgaccaatgaagcgtccaacttgattgaccctctagtactgtactgaccaaatatcaagaacatggttctcacgtcgtcgtcgttc 87033  T
Q  235 atcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccat 304  Q
    || ||||  |||||| |||||| | ||||||   |||||||| ||||| ||  | |||||||||||||||    
T  87032 atgagctatatccggctgaaccacgcactcccgcctgagtcggtcgattgaaatcgatactcaacaccat 86963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 448
Target Start/End: Complemental strand, 86909 - 86815
Alignment:
Q  354 ctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttgatgt 448  Q
    ||||||||||| | ||||||||| | ||| || | |||||||||| | ||||  ||||||| |||| ||||||| ||||| | ||||||||||||    
T  86909 ctgacccttcaactcagagagggtgccatcagagggaatcctgaacacatggggtggtttccccccattgtagtgaactgcagctagcttgatgt 86815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 56 - 364
Target Start/End: Original strand, 20819684 - 20819995
Alignment:
Q  56 ctaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgac 155  Q
    |||||||||| ||||| | | ||| |||||  || ||||| ||||||||||||||| | || | |||||||||||  ||||| ||||||||| |||||||    
T  20819684 ctaaattaatatcttcgtgttgtgtgtccattagagccctgatctcttcgtagttccttggccggatcaaactttgttgaatatgttcaacagatctgac 20819783  T
Q  156 caacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca---cgtcgccgttcatcagcttcatccgggtg 252  Q
    ||||||||||||||||||||||||  ||||||||||| |||  |||||||| ||||| ||| ||||||   ||||| ||||||| ||||||||| |||||    
T  20819784 caacgaagcgtccaactcgatcggctctctagtactgaactagccaaagatgaagaacatgtttctcacgccgtcgtcgttcatgagcttcatctgggtg 20819883  T
Q  253 aaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatcca 352  Q
    |||||||||||||    ||||||| |||| ||||||||||| ||||||||||||| ||| ||| ||||| | |||||||||| | | |||||| ||| ||    
T  20819884 aaccgcacactcccgagtgagtcggtcgacggatgttgataatcaacaccatccatccttcgtttgtctttgtagttgagtttgagattgatttgattca 20819983  T
Q  353 gctgacccttca 364  Q
    |||||| |||||    
T  20819984 gctgactcttca 20819995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 97 - 362
Target Start/End: Original strand, 19626535 - 19626800
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| | || | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||     
T  19626535 atctcttcgtagttcctaggccggatcaaacttttatgaatttgttcaacagatctgaccaacgaagcgtccaactcgatcgaccctctagtactgtaca 19626634  T
Q  197 gaccaaagatcaagaatatggttctcacgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactc 296  Q
    |||||| |||| |||| ||||||||||||||| | ||||| ||||||||| |  | || |||||||||     ||||||| ||||   | || ||||||     
T  19626635 gaccaatgatcgagaacatggttctcacgtcgtcattcatgagcttcatctgtctaaaacgcacactctcgattgagtcggtcgacaaacgtcgatacta 19626734  T
Q  297 aacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgaccctt 362  Q
     |||||||||| |||| |||||||||| |||||||||| | | |||||||||| ||| ||||||||    
T  19626735 tacaccatccatcctctgtgtgtctctgtagttgagttcgagattgattcgattcagttgaccctt 19626800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 405
Target Start/End: Complemental strand, 20387027 - 20386669
Alignment:
Q  50 gatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacata 149  Q
    ||||| ||||| |||| ||||||| |||||| ||||| |||||||| ||||||||||||||| |||| | ||||||| |||| | ||||||||||||| |    
T  20387027 gatcagctaaactaatgtcttcatctggtgcatccagcagtgccctgatctcttcgtagttcctgggacggatcaaatttttcttaatttgttcaacaga 20386928  T
Q  150 tctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcac---gtcgccgttcatcagcttcatc 246  Q
    | |   |||||||||||||||||||||||||||| | ||| |||||| |||||||||| |||| |||||||||||   |||| ||||    || ||||||    
T  20386927 ttttcacaacgaagcgtccaactcgatcggtcctttggtaatgtactaaccaaagatcgagaacatggttctcacgtcgtcgtcgtttccgagattcatc 20386828  T
Q  247 cgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattc 346  Q
    |||  |||||||||| | |   |||||||  ||||||||  | ||||||||| | | ||||| |||| ||||||||| | ||||||||| |||||||||     
T  20386827 cggccgaaccgcacagttccaactgagtcagtcgatggacatcgatactcaagatcgtccactctccttgtgtctctatggttgagttgacggttgattt 20386728  T
Q  347 gatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
    |||| |||||| |||||| | | ||||| | ||||| |||| || ||||||||| ||||    
T  20386727 gatctagctgatccttcaacccggagagcgtgacatcagtgagagtcctgaatacatgg 20386669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 17520915 - 17521097
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    |||| |||| |||||||| | ||||| |||||||| |||| ||||||||| ||||||||||||||| |||| |||||||||||||| | ||  | |||||    
T  17520915 cacatatcagctaaattattgtcttcctatggtgcatccatgagtgccctgatctcttcgtagttcatgggccagatcaaacttttctaaaaattttcaa 17521014  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcg 228  Q
    || |||||||||||||||| |||||||||||||| | |||||||||||||||| |||||||| |||| |||||||||||||||    
T  17521015 cagatctgaccaacgaagcatccaactcgatcggccgtctagtactgtactgaacaaagatcgagaacatggttctcacgtcg 17521097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 46 - 263
Target Start/End: Original strand, 25172866 - 25173086
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||||| |||||||||| ||||||| | || ||||||  |||||||| ||||||||||||||| | || |  |||||| |||  ||||| |||||||    
T  25172866 cacagatcatctaaattaatgtcttcatctagtacgtccattagtgccctgatctcttcgtagttccttggccgaatcaaagtttgttgaatatgttcaa 25172965  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccg---ttcatcagctt 242  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||| | ||||||||||||||| |||| || |||||||||||| ||   ||||| |||||    
T  25172966 catatctgaccaacgatgcgtccaactcgaccggccctctagtattatactgaccaaagatcgagaacatcgttctcacgtcgtcgtcattcatgagctt 25173065  T
Q  243 catccgggtgaaccgcacact 263  Q
    ||||||| | |||||||||||    
T  25173066 catccggcttaaccgcacact 25173086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 382
Target Start/End: Original strand, 13038146 - 13038434
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||| ||    
T  13038146 atctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatcggtcctcttgtactgtgct 13038245  T
Q  197 gaccaaagatcaagaatatggttctca---cgtcgccgttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgata 293  Q
    |||||||||   |||||||||||| ||   ||||||||||| | || ||||||||| |||| || | |   || |||||||||  | |||||  | ||||    
T  13038246 gaccaaagacagagaatatggttcgcacgtcgtcgccgttcttgagtttcatccggctgaagcgaagagatctggctgagtcggacaatggacatcgata 13038345  T
Q  294 ctcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacat 382  Q
     ||||| ||  |||||||||  |||||| | | ||||||||| ||||||| | ||||||||| | |||||||| | ||||||| |||||    
T  13038346 ttcaactccgaccaccctcctcgtgtctttgtggttgagttgacggttgaattgatccagctcatccttcagcccggagagggtgacat 13038434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 444
Target Start/End: Original strand, 25176451 - 25176626
Alignment:
Q  268 gctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagca 367  Q
    ||||||||  |||| ||| || |||||| |||||| |||||||||| | |||||||  ||||||||| | |||||||| ||| |||||||| ||||| |     
T  25176451 gctgagtcagtcgacggacgtcgatactaaacaccgtccaccctccatttgtctctgaagttgagtttgaggttgatttgattcagctgactcttcaacc 25176550  T
Q  368 cagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    ||||| | | ||||| |||| |||||||||| ||||||  ||||||| |||  ||||||||||||| ||||||||||    
T  25176551 cagagtgcgtgacattagtgggaatcctgaacagatggggtggtttc-cccaattgtagtaaactgcaactagcttg 25176626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 444
Target Start/End: Original strand, 17521131 - 17521296
Alignment:
Q  278 tcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggc 377  Q
    |||||||| || |||||||||||| ||||||||||||||||||| | |||||||||||||| ||||   | |||||||||||||| | |   || ||||     
T  17521131 tcgatggacgtcgatactcaacacaatccaccctccgtgtgtctttgtagttgagttggcgattgacatgttccagctgaccctttaacttggatagggt 17521230  T
Q  378 gacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagcttg 444  Q
    ||||| | ||  ||||||||| ||||||  ||||||| ||||||||||||||| || | ||||||||    
T  17521231 gacatcaatgcaaatcctgaacagatggggtggtttc-ccccgttgtagtaaattgcagctagcttg 17521296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 34950110 - 34950194
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtc 181  Q
    ||||||||||||||| |||  |||  |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  34950110 atctcttcgtagttcctggtccagtgcaaacttttcagaatttgttcagcatatctaaccaacgaagcgtccaactcgatcggtc 34950194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 29436172 - 29436254
Alignment:
Q  123 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaaga 205  Q
    |||||||||  ||||||||||| || |||| ||||   ||||||||||||||||||||||||| ||||||| |||||||||||    
T  29436172 caaacttttcagaatttgttcagcagatctaaccatgaaagcgtccaactcgatcggtcctcttgtactgtgctgaccaaaga 29436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 32420244 - 32420191
Alignment:
Q  268 gctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtct 321  Q
    ||||||||| ||||||||| | |||||||||||| ||||| ||||| |||||||    
T  32420244 gctgagtcggtcgatggatatcgatactcaacacaatccatcctccttgtgtct 32420191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 32426085 - 32426032
Alignment:
Q  268 gctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtct 321  Q
    ||||||||| ||||||||| | |||||||||||| ||||| ||||| |||||||    
T  32426085 gctgagtcggtcgatggatatcgatactcaacacaatccatcctccttgtgtct 32426032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 12304195 - 12304071
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    ||||||| | ||||| ||| |||||| | |||| | ||||| || ||||| ||||||||||||||| |||| | ||||||| |||| |  |||||||||     
T  12304195 cacagataatctaaactaacttcttcctctggtccctccagcagagccctgatctcttcgtagttcctgggccggatcaaatttttttttatttgttcag 12304096  T
Q  146 catatctgaccaacgaagcgtccaa 170  Q
    || |||| ||||  |||| ||||||    
T  12304095 cagatctaaccacagaagtgtccaa 12304071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 46 - 444
Target Start/End: Complemental strand, 7218 - 6818
Alignment:
Q  46 cacagatcaactaaattaatttcttcatatggtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaa 145  Q
    |||| |||| |||||||||| ||||| | |||||||||||  |||  | | |||||||||||||| |||||   |||||||||||  ||||| |||||||    
T  7218 cacaaatcatctaaattaatgtcttcgtgtggtgcgtccattagtttcatgatctcttcgtagtttttgggctggatcaaactttgttgaatatgttcaa 7119  T
Q  146 catatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtactgaccaaagatcaagaatatggttctca---cgtcgccgttcatcagctt 242  Q
    |  |||  |||||  ||||||||||| ||||||  |||||| ||||||||| |||||||||| |||| ||||||||||   | ||| ||||||| |||||    
T  7118 cggatcataccaagcaagcgtccaacacgatcgaccctctaatactgtactaaccaaagatcgagaacatggttctcacatcctcgtcgttcatgagctt 7019  T
Q  243 catccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttg 342  Q
    ||||| | |||||||||||||||    ||||||  ||||  || || ||||||||| || ||||||  |||| |||||||| |||||||||| | |||||    
T  7018 catccagatgaaccgcacactcccgattgagtcagtcgacagacgtcgatactcaatacaatccacgatccgcgtgtctctgtagttgagttcgaggttg 6919  T
Q  343 attcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaactgtaactagct 442  Q
    ||| |||  ||||||||||||| | | ||||||| ||||| |||| |||||||||||||||||  ||||||| |||||||||||| ||| | ||||||||    
T  6918 atttgatttagctgacccttcaac-cggagagggtgacatcagtgggaatcctgaatagatggggtggtttccccccgttgtagttaacagcaactagct 6820  T
Q  443 tg 444  Q
    ||    
T  6819 tg 6818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 77 - 431
Target Start/End: Complemental strand, 61942 - 61586
Alignment:
Q  77 gtgcgtccaggagtgccctaatctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgat 176  Q
    |||| ||||| |||||||| ||||||||||||||| | || | ||||||||||||  ||||| |||||||| ||||| || | ||||| |||||||||||    
T  61942 gtgcttccagtagtgccctgatctcttcgtagttcctaggccggatcaaactttttcgaattcgttcaacagatctggcccaagaagcatccaactcgat 61843  T
Q  177 cggtcctctagtactgtactgaccaaagatcaagaatatggttctcacgtcgccgt---tcatcagcttcatccgggtgaaccgcacactccttgctgag 273  Q
    ||| ||||| ||| ||||||||  ||| ||  |||| ||||||||||||||| |||   |||| ||||||||| |  |||||| || |||||| | ||||    
T  61842 cggccctcttgtattgtactgaaaaaa-atggagaacatggttctcacgtcgtcgtcgttcatgagcttcatcagactgaaccacagactcctagatgag 61744  T
Q  274 tcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagaga 373  Q
    ||| | |  ||| || ||||||||||||||||||||||| ||||||||||   |||||||| | ||||||||  || |||||||| ||||| | | |||     
T  61743 tcggttggcggacgtcgatactcaacaccatccaccctctgtgtgtctctgcggttgagttcgaggttgatttcattcagctgactcttcaacccggagt 61644  T
Q  374 gggcgacataagtgtgaatcctgaatagatggattggtttctccccgttgtagtaaac 431  Q
    ||| || || |||| |||||||||| ||||||  |||||| |||||||||||||||||    
T  61643 gggtgatatcagtgcgaatcctgaacagatggggtggtttttccccgttgtagtaaac 61586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 435
Target Start/End: Complemental strand, 17916 - 17582
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |  | | |||||||||||   |||| ||||||||| || ||||||||||||| |||||||||||||  |||||||||||| |||    
T  17916 atctcttcgtagttccttcgccggatcaaactttatcgaatatgttcaacagatttgaccaacgaagcatccaactcgatcgaccctctagtactgaact 17817  T
Q  197 gaccaaagatcaagaatatggttctcacgtcgccgt---tcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgata 293  Q
    | ||||||||  ||       || |||||||| | |   |||| |||||||||||||||||| |||||||||  | | ||||| |||||||| || ||||    
T  17816 ggccaaagatggag-------ttatcacgtcgtcatcattcatgagcttcatccgggtgaactgcacactcccggattagtcggtcgatggacgtcgata 17724  T
Q  294 ctcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatc 393  Q
    |||||||||||  | |||| |||||||||| ||||| |||| | ||||||||  || |||| ||| ||||| | | |||||||  |||| | ||||||||    
T  17723 ctcaacaccatatatcctctgtgtgtctctgtagttcagttcgaggttgatttaattcagccgactcttcaacccggagagggtcacatcattgtgaatc 17624  T
Q  394 ctgaatagatggattggtttctccccgttgtagtaaactgta 435  Q
     |||| | ||||  ||||||| | | ||||||||||||||||    
T  17623 atgaacaaatggggtggtttccctctgttgtagtaaactgta 17582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 232 - 405
Target Start/End: Complemental strand, 37057 - 36884
Alignment:
Q  232 ttcatcagcttcatccgggtgaaccgcacactccttgctgagtcgatcgatggatgttgatactcaacaccatccaccctccgtgtgtctctttagttga 331  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||| | |||||| | |  ||||| |||||||||| ||||||||||||||||| |||||||    
T  37057 ttcatgagcttcatccgggtgaaccgcacacccctagctgagttggtcgatgaacgacgatacacaacaccatctaccctccgtgtgtctctatagttga 36958  T
Q  332 gttggcggttgattcgatccagctgacccttcagcacagagagggcgacataagtgtgaatcctgaatagatgg 405  Q
    ||| | ||||||||  || ||||| || ||||| | | ||||||| ||||| | || ||||| |||||||||||    
T  36957 gttcgaggttgattttattcagctaactcttcaacccggagagggtgacatcattgcgaatcatgaatagatgg 36884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 227
Target Start/End: Original strand, 16728 - 16858
Alignment:
Q  97 atctcttcgtagttcttgggtcagatcaaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtact 196  Q
    ||||||||||||||| |||  | |  |||||||||  ||||||||||| || |||| ||||| ||||||||||||||||| |||||||| ||||||| ||    
T  16728 atctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaatgaagcgtccaactcgattggtcctcttgtactgtgct 16827  T
Q  197 gaccaaagatcaagaatatggttctcacgtc 227  Q
    |||||||||   |||| ||||||| ||||||    
T  16828 gaccaaagacagagaacatggttcgcacgtc 16858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 382
Target Start/End: Complemental strand, 7566 - 7467
Alignment:
Q  283 ggatgttgatactcaacaccatccaccctccgtgtgtctctttagttgagttggcggttgattcgatccagctgacccttcagcacagagagggcgacat 382  Q
    |||||| ||||||||||| |||||||||||||||||||||| || ||||||| | |||||||| ||| || ||||||||||| | | ||||||| |||||    
T  7566 ggatgtcgatactcaacatcatccaccctccgtgtgtctctatacttgagtttgaggttgatttgattcaactgacccttcaacccggagagggtgacat 7467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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