View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9424_low_10 (Length: 302)

Name: NF9424_low_10
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9424_low_10
NF9424_low_10
[»] chr2 (3 HSPs)
chr2 (1-266)||(33858496-33858761)
chr2 (42-121)||(11272549-11272628)
chr2 (57-121)||(13016037-13016101)
[»] chr8 (4 HSPs)
chr8 (40-122)||(36404050-36404132)
chr8 (40-108)||(37269843-37269911)
chr8 (42-108)||(42941259-42941325)
chr8 (54-108)||(9936427-9936481)
[»] scaffold0760 (1 HSPs)
scaffold0760 (40-108)||(1722-1790)
[»] chr4 (2 HSPs)
chr4 (42-128)||(16989625-16989712)
chr4 (42-108)||(2282262-2282328)
[»] chr6 (3 HSPs)
chr6 (42-128)||(2920915-2921002)
chr6 (42-128)||(18246525-18246612)
chr6 (40-122)||(32548928-32549009)
[»] chr7 (2 HSPs)
chr7 (42-109)||(31234744-31234811)
chr7 (54-108)||(42460101-42460155)
[»] chr3 (3 HSPs)
chr3 (42-128)||(1259272-1259359)
chr3 (42-128)||(37242560-37242647)
chr3 (42-128)||(53553630-53553716)
[»] chr1 (2 HSPs)
chr1 (54-108)||(32774127-32774181)
chr1 (47-115)||(46594856-46594924)
[»] chr5 (1 HSPs)
chr5 (63-108)||(40296118-40296163)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33858761 - 33858496
Alignment:
Q  1 aaagcaaatcatccaaactttaattgacttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatag 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33858761 aaagcaaatcatccaaactttaattggcttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatag 33858662  T
Q  101 aagatgaacgtggctgttttttgaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtgnnnnnnnggctggtccggtttt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  33858661 aagatgaacgtggctgtttttttaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtg-ttttttggctggtccggtttt 33858563  T
Q  201 aagggggg-tttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtg 266  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858562 aaggggggttttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtg 33858496  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 11272549 - 11272628
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 121  Q
    |||| |||||| |||||||| |||||||| ||||||| |||| |||| || | ||||||||||||||||  |||||||||    
T  11272549 aagatagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaacgacgctgttttt 11272628  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 13016101 - 13016037
Alignment:
Q  57 ctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 121  Q
    ||||| ||||||||||||||||||||  |||| || || ||||||||||||| |  |||||||||    
T  13016101 ctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgttttt 13016037  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 36404132 - 36404050
Alignment:
Q  40 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 122  Q
    |||||| ||||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  36404132 ttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagatgaaggtgactgtttttt 36404050  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 37269911 - 37269843
Alignment:
Q  40 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  37269911 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 37269843  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 42941259 - 42941325
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||||||||    
T  42941259 aagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaa 42941325  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 9936427 - 9936481
Alignment:
Q  54 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||||||| ||||||||||||||||| ||| || | || ||||||||||||||||    
T  9936427 ttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaa 9936481  T

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Target: scaffold0760 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 1790 - 1722
Alignment:
Q  40 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  1790 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 16989625 - 16989712
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 128  Q
    |||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||| |||||| |||||||||||    
T  16989625 aagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 16989712  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 2282262 - 2282328
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||||||| || |||||||| ||||| ||||||| ||| ||| | ||||| ||||||||||||||||    
T  2282262 aagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatgcctaaatagaagatgaa 2282328  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 2921002 - 2920915
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 128  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| ||||||||||||||||| | |||||||||||    
T  2921002 aagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggctttctttttgaatct 2920915  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 18246612 - 18246525
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 128  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||| |||||| |||||||||||    
T  18246612 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 18246525  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 32548928 - 32549009
Alignment:
Q  40 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 122  Q
    |||||| |||||| ||| |||| ||| ||||||||| ||||||| || ||||||||||||||||||||| |  ||||||||||    
T  32548928 ttaagatagcttctttc-tcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgtttttt 32549009  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 31234811 - 31234744
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaac 109  Q
    |||| |||||| |||||||| ||||||||||||||||||||  ||||||||||||| |||||||||||    
T  31234811 aagatagcttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaagatgaac 31234744  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 42460155 - 42460101
Alignment:
Q  54 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||||||| ||||||| ||||||||||||| |||| || ||||||||||||||||    
T  42460155 ttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaa 42460101  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 1259359 - 1259272
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 128  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  1259359 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 1259272  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 37242647 - 37242560
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 128  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  37242647 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 37242560  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 53553716 - 53553630
Alignment:
Q  42 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttttgaatct 128  Q
    |||| |||||| |||||||| ||||||||||||||||||||| |||| || |||||||| ||||||| |  ||||||||||| ||||    
T  53553716 aagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatct 53553630  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 32774181 - 32774127
Alignment:
Q  54 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||    
T  32774181 ttcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 46594924 - 46594856
Alignment:
Q  47 agcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggct 115  Q
    ||||||||| ||||| || ||||||||||| ||||||  ||||||| ||||||| ||||||| ||||||    
T  46594924 agcttcctttctcttttacgagtggacttgaaatcctaaagaatgtttaaataggagatgaaagtggct 46594856  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 40296163 - 40296118
Alignment:
Q  63 tatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 108  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||    
T  40296163 tatgagtggacttggaatcctaaagagtgtctaaatagaagatgaa 40296118  T

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