View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9424_low_12 (Length: 276)
Name: NF9424_low_12
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9424_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 354949 - 354845
Alignment:
| Q |
11 |
caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca |
110 |
Q |
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| T |
354949 |
caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca |
354850 |
T |
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| Q |
111 |
ctcac |
115 |
Q |
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||||| |
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| T |
354849 |
ctcac |
354845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 10581348 - 10581244
Alignment:
| Q |
11 |
caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca |
110 |
Q |
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||||| || |||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||||||| |
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| T |
10581348 |
caaagatatggattttagtggattcatcaatttccaaaggaacacctgcgcatccactaagttaaaataacaaaactaaaaaaaatcaagttaacaaaca |
10581249 |
T |
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| Q |
111 |
ctcac |
115 |
Q |
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||||| |
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| T |
10581248 |
ctcac |
10581244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 354768 - 354699
Alignment:
| Q |
192 |
ctgtacttcatcgaaaccaaattaaactgtgtatttgtctaannnnnnnagtcaagggattaacataagt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
354768 |
ctgtacttcatcgaaaccaaattaaactgtgtatttgtctaatttttttagtcaagggattaacataagt |
354699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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