View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9424_low_15 (Length: 245)

Name: NF9424_low_15
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9424_low_15
NF9424_low_15
[»] chr2 (5 HSPs)
chr2 (1-94)||(33858760-33858853)
chr2 (172-227)||(33858899-33858954)
chr2 (40-94)||(33858738-33858792)
chr2 (44-86)||(33422618-33422660)
chr2 (1-39)||(33858821-33858859)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33858760 - 33858853
Alignment:
Q  1 ttcttaaataatcatttatggtgcttccatatggtttttattaaagtttggatgatttgctttcttaaataatcatttatggtgtttccatatg 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858760 ttcttaaataatcatttatggtgcttccatatggtttttattaaagtttggatgatttgctttcttaaataatcatttatggtgtttccatatg 33858853  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 33858899 - 33858954
Alignment:
Q  172 ttgcctccgtcagatgagaggatagtgaaaacagtggcaagcctaaggataacttg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33858899 ttgcctccgtcagatgagaggatagtgaaaacagtggcaagcctaaggagaacttg 33858954  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 33858738 - 33858792
Alignment:
Q  40 attaaagtttggatgatttgctttcttaaataatcatttatggtgtttccatatg 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33858738 attaaagtttggatgatttgctttcttaaataatcatttatggtgcttccatatg 33858792  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 33422618 - 33422660
Alignment:
Q  44 aagtttggatgatttgctttcttaaataatcatttatggtgtt 86  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  33422618 aagtttggatgatttgctttcttaaataatcgtttatggtgtt 33422660  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33858821 - 33858859
Alignment:
Q  1 ttcttaaataatcatttatggtgcttccatatggttttt 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  33858821 ttcttaaataatcatttatggtgtttccatatggttttt 33858859  T

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