View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9424_low_16 (Length: 202)
Name: NF9424_low_16
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9424_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 29121814 - 29121985
Alignment:
| Q |
13 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttgtccgataatgcattctttctgattcatcttttaatgcaggaagatgtgcaa |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121814 |
cacaaatacaaggtaaacaagacacaaggcttctatctttctaattttgtccggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcaa |
29121913 |
T |
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| Q |
113 |
ctcatggttgaaacaggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtattcta |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121914 |
ctcatggttgaaacaggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtattcta |
29121985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 39630657 - 39630825
Alignment:
| Q |
13 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttgtccgataatgcattctttctgattcatcttttaatgcaggaagatgtgcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630657 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcag |
39630756 |
T |
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| Q |
113 |
ctcatggttgaaacaggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtatt |
181 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630757 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatt |
39630825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 39641443 - 39641612
Alignment:
| Q |
13 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttgtccgataatgcattctttctgattcatcttttaatgcaggaagatgtgcaa |
112 |
Q |
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|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39641443 |
cacaaatacaaggtaaacaagacacaaggcttctatctttctaattttgtctagtaatgcattctttatgattcatcttttaatgcaggaagatgtgcag |
39641542 |
T |
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| Q |
113 |
ctcatggttgaaacaggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtattc |
182 |
Q |
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||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39641543 |
ctcatggttgaaacaggtcttgaagcctatagattttccatttcttggtcaagattgataccaagtattc |
39641612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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