View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9424_low_4 (Length: 400)
Name: NF9424_low_4
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9424_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 35165164 - 35164780
Alignment:
| Q |
1 |
aatatgtcacaatagaccccacagtctcaagaactcaacacacgttagaaccaaccaagaccacaatgacaccatcagtagttaagttgtacccaccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35165164 |
aatatgtcacaatagaccccacagtctcaagaactcaacacacattagaaccaaccaagaccacaatgacaccatcagtagttaagttgtacccaccaaa |
35165065 |
T |
|
| Q |
101 |
acacaacacgtgttataactgcctcgtcgcataagtcataaactcggtatctaactcaagagccgccatagtttctggcgccaaaacaacctccaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35165064 |
acacaacacgtgttataactgcctcgtcgcataagtcataaactcggtatctaattcaagagccgccatagtttctggcgccaatacaacctccaaatca |
35164965 |
T |
|
| Q |
201 |
accgtcccacttccatctctccctggaaacgccgaaatcttaccgtcaaatttattcgctttcccactcctaaccaccaacggtttcccccaaccaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35164964 |
accgtcccacttccatctctccctggaaacgccgaaatcttaccgtcaaatttattcgctttcccactcctaaccaccaagggtttcccccaaccaaaat |
35164865 |
T |
|
| Q |
301 |
cattgtcatacatcggaaacctaggagaactacccatagttatagaaccaccatcactattccccaaaggaaaacacctaggatt |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35164864 |
cattgtcatacatcggaaacctaggagaactacccatagttatagaaccaccatcactattccccaaaggaaaacacctaggatt |
35164780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 337
Target Start/End: Complemental strand, 31439956 - 31439838
Alignment:
| Q |
219 |
ctccctggaaacgccgaaatcttaccgtcaaatttattcgctttcccactcctaaccaccaacggtttcccccaaccaaaatcattgtcatacatcggaa |
318 |
Q |
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| T |
31439956 |
ctccccggaaacgccgacatcttcccatcaaacttattcgcaccaccactcctcaccgccaacggccgcccccatccaaaatcattctcatacatcggaa |
31439857 |
T |
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| Q |
319 |
acctaggagaactacccat |
337 |
Q |
| |
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||||| | ||||| ||||| |
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| T |
31439856 |
acctatgggaacttcccat |
31439838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 385
Target Start/End: Complemental strand, 4410522 - 4410319
Alignment:
| Q |
182 |
caaaacaacctccaaatcaaccgtcccacttccatctctccctggaaacgccgaaatcttaccgtcaaatttattcgctttcccactcctaaccaccaac |
281 |
Q |
| |
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||||||||| || | |||||| ||||| |||| ||||| || ||||| || ||||| ||||| ||||||||||| ||| |||||||| | |||| |
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| T |
4410522 |
caaaacaacttcaagatcaacactcccatttccttctctaccaggaaaagctgaaattttaccatcaaatttattacttttaccactccttatagccaaa |
4410423 |
T |
|
| Q |
282 |
ggtttcccccaaccaaaatcattgtcatacatcggaaacctaggagaactacccatagttatagaaccaccatcactattccccaaaggaaaacacctag |
381 |
Q |
| |
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||| | ||||| ||||||||||| |||||||| ||||| | || ||||||||||||||||| | |||||||| |||||| | |||||| |||||| |
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| T |
4410422 |
ggtataccccacccaaaatcattatcatacataggaaaacgtggtgaactacccatagttatcatagcaccatcaaaattcccaagaggaaataacctag |
4410323 |
T |
|
| Q |
382 |
gatt |
385 |
Q |
| |
|
|||| |
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|
| T |
4410322 |
gatt |
4410319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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