View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9424_low_5 (Length: 338)
Name: NF9424_low_5
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9424_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 30399659 - 30399965
Alignment:
| Q |
19 |
atttaagctatcacttttagacattaatggtattaannnnnnnnnagggaagacattaatggtattcatatcatacataagttatcgttactacattttt |
118 |
Q |
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| T |
30399659 |
atttaagctatcacttttagacattaatggtattaatttttttttagggaagacattaatggtattcatatcatacataagttatcgttactacattttt |
30399758 |
T |
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| Q |
119 |
gtactttcatacttttaacctatcatttttataagttaaagtcatgtatttaatgcttgcactgcatattaggcattaatggaagctctttatggtaatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30399759 |
gtactttcatacttttaacctatcatttttataagttaaagtcatgtgtttaatgcttgcactgcatattaggcattaatggaagctctttatggtaatg |
30399858 |
T |
|
| Q |
219 |
gtaatggagatgaagttgttgatgggaatggagagctagttgttaacgagactgccaataataaaaagactaaatatttctttgacaaaggagaacctca |
318 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |
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| T |
30399859 |
gtaatggagatgaagttgttgatgggaacggagagctagttgttaacgagactgccaataataaaaagact--atatttttttgacaaaggagaacctta |
30399956 |
T |
|
| Q |
319 |
tagagaaca |
327 |
Q |
| |
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||||||||| |
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| T |
30399957 |
tagagaaca |
30399965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 30406216 - 30406522
Alignment:
| Q |
19 |
atttaagctatcacttttagacattaatggtattaannnnnnnnnagggaagacattaatggtattcatatcatacataagttatcgttactacattttt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30406216 |
atttaagctatcacttttagacattaatggtattaatttttttttagggaagacattaatggtattcatatcatacataagttatcgttactacattttt |
30406315 |
T |
|
| Q |
119 |
gtactttcatacttttaacctatcatttttataagttaaagtcatgtatttaatgcttgcactgcatattaggcattaatggaagctctttatggtaatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30406316 |
gtactttcatacttttaacctatcatttttataagttaaagtcatgtgtttaatgcttgcactgcatattaggcattaatggaagctctttatggtaatg |
30406415 |
T |
|
| Q |
219 |
gtaatggagatgaagttgttgatgggaatggagagctagttgttaacgagactgccaataataaaaagactaaatatttctttgacaaaggagaacctca |
318 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |
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| T |
30406416 |
gtaatggagatgaagttgttgatgggaacggagagctagttgttaacgagactgccaataataaaaagact--atatttttttgacaaaggagaacctta |
30406513 |
T |
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| Q |
319 |
tagagaaca |
327 |
Q |
| |
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||||||||| |
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| T |
30406514 |
tagagaaca |
30406522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 25830857 - 25830793
Alignment:
| Q |
216 |
atggtaatggagatgaagttgttgatgggaatggagagctagttgttaacgagactgccaataat |
280 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||| |
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| T |
25830857 |
atggtaatggagatcaagttgttgatgggaatggagagcaagttgttaatgagactaccaataat |
25830793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 33001726 - 33001777
Alignment:
| Q |
216 |
atggtaatggagatgaagttgttgatgggaatggagagctagttgttaacga |
267 |
Q |
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|||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
33001726 |
atggtaatggagatcaagttgttgatgggaatgtagagcaagttgttaacga |
33001777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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