View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9424_low_9 (Length: 320)
Name: NF9424_low_9
Description: NF9424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9424_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 42960898 - 42960715
Alignment:
| Q |
9 |
actgagactggacagctctttgctttgactgatgagaggccaacatgcattgatgttatgagtacgactgaaaattcttaatagtattgcttccattaaa |
108 |
Q |
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| T |
42960898 |
actgagactggacagctctttgctttgactgatgagagaccaacatgcattgatgttatgagtacgactgaaaattcttaatagtattgcttccattaaa |
42960799 |
T |
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| Q |
109 |
aagggcttagaaagaaagaaaatatcactatctttgcaacatgacaacatttattcatcaaagcaaaatattgaagtaacggtg |
192 |
Q |
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| T |
42960798 |
aagggcttagaaagaaagaaaatatcactatctttgcaacatgacaacatttattcatcaaagcaaaatattgaagtaacggtg |
42960715 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 28869085 - 28868974
Alignment:
| Q |
10 |
ctgagactggacagctctttgctttgactgatgagaggccaacatgcattgatgttatgagtacgactgaaaattcttaatagtattgcttccattaaaa |
109 |
Q |
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||||||||||||||||| |||||||||||||| ||| |||||||| || |||| | | | ||| ||| |||||| | |||||||||||| || ||||| |
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| T |
28869085 |
ctgagactggacagctcattgctttgactgataggagaccaacatgtatcgatgatttaaatacacctggaaattcct-atagtattgctt-caataaaa |
28868988 |
T |
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| Q |
110 |
agggcttagaaagaa |
124 |
Q |
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| T |
28868987 |
aggg-ttagaaagaa |
28868974 |
T |
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