View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9425_high_3 (Length: 255)
Name: NF9425_high_3
Description: NF9425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9425_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 31031857 - 31031616
Alignment:
| Q |
1 |
atgagatggacatcaaagattatatctttggacaaccttgcgaggagacaaaactcattgaggctgtttttacacttttacgttatgagtagtttatccc |
100 |
Q |
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| T |
31031857 |
atgagatgtatatcaaagagtatatctttggacaaccttgccaggagacaaaactcgttgaggctgtttttacagttttacattctgggtagtttatccc |
31031758 |
T |
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| Q |
101 |
aacatatgttcggagttaatttgcgagcagttcgacggttcacattcaagtgaatgggacaattatattgtaaccactgaattatagtaataacaacggt |
200 |
Q |
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| T |
31031757 |
aatatatgttcggagttattttgcgagcagttcgacggttcacattcaagtgaatgagacaattatattgtaaccactgaattatagtaataacaacggt |
31031658 |
T |
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| Q |
201 |
tatgagttgtataaccgagatatacattttcggttcttgttg |
242 |
Q |
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| T |
31031657 |
tatgagttgtataaccgagatatacattttcggttcttgttg |
31031616 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 28355979 - 28356076
Alignment:
| Q |
22 |
atatctttggacaaccttgcgaggagacaaaa-ctcattgaggctgtttttacacttttacgttatgagtagtttatcccaacatatgttcggagtta |
118 |
Q |
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||||||||||||||||||||| |||||||||| || |||||| |||||||| | ||| ||||| ||||||||||||||||| | |||| ||||||| |
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| T |
28355979 |
atatctttggacaaccttgcggggagacaaaatcttgttgaggttgtttttatagtttcacgttcggagtagtttatcccaacgtttgtttggagtta |
28356076 |
T |
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