View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9425_low_17 (Length: 231)
Name: NF9425_low_17
Description: NF9425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9425_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 12273635 - 12273539
Alignment:
| Q |
128 |
ttacagcatcaagaaaagcatcaacaagagtgacactattcatgattacaacagcagaatcacgcgtagcttcattccttaactcattcctttgctt |
224 |
Q |
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| T |
12273635 |
ttacagcatcaagaaaagcatcaacaagagtaacactattcatgattacaacagcagaatcacgcgtagcttcattccttaactcattcctttgctt |
12273539 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12273763 - 12273723
Alignment:
| Q |
1 |
tggaaacaattccatccatttttgctataaaacatacaagg |
41 |
Q |
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| T |
12273763 |
tggaaacaattccatccatttttgctataaaacatacaagg |
12273723 |
T |
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