View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9425_low_2 (Length: 385)

Name: NF9425_low_2
Description: NF9425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9425_low_2
NF9425_low_2
[»] chr4 (21 HSPs)
chr4 (8-210)||(37749703-37749905)
chr4 (8-145)||(37751948-37752085)
chr4 (8-145)||(37742633-37742770)
chr4 (237-385)||(12473699-12473849)
chr4 (237-385)||(12528108-12528258)
chr4 (243-381)||(33249404-33249544)
chr4 (237-381)||(21260789-21260935)
chr4 (242-385)||(35869597-35869742)
chr4 (242-374)||(22343337-22343471)
chr4 (236-334)||(52910126-52910226)
chr4 (236-336)||(52012772-52012874)
chr4 (277-385)||(51811951-51812059)
chr4 (237-317)||(55590477-55590559)
chr4 (237-336)||(49999663-49999764)
chr4 (271-330)||(1796163-1796222)
chr4 (240-336)||(9799438-9799536)
chr4 (259-326)||(34829168-34829235)
chr4 (58-123)||(37733069-37733134)
chr4 (264-333)||(46719954-46720023)
chr4 (352-385)||(35781021-35781054)
chr4 (263-299)||(35781027-35781063)
[»] chr1 (9 HSPs)
chr1 (237-385)||(29119350-29119500)
chr1 (237-385)||(32676131-32676281)
chr1 (242-385)||(2569037-2569181)
chr1 (234-336)||(8809715-8809819)
chr1 (237-385)||(46435491-46435629)
chr1 (236-333)||(25161303-25161402)
chr1 (258-385)||(8462146-8462273)
chr1 (269-332)||(3688917-3688980)
chr1 (246-318)||(7214504-7214578)
[»] chr3 (14 HSPs)
chr3 (235-385)||(47426343-47426495)
chr3 (237-373)||(33509675-33509813)
chr3 (237-385)||(44380249-44380399)
chr3 (243-336)||(50934501-50934596)
chr3 (259-385)||(37742744-37742870)
chr3 (236-336)||(47186169-47186271)
chr3 (241-336)||(31187145-31187242)
chr3 (237-306)||(10179868-10179939)
chr3 (235-308)||(32319468-32319543)
chr3 (241-336)||(42664672-42664769)
chr3 (264-336)||(17466297-17466369)
chr3 (241-336)||(34029366-34029463)
chr3 (266-381)||(35094572-35094689)
chr3 (237-306)||(10018671-10018742)
[»] chr2 (8 HSPs)
chr2 (237-385)||(34392107-34392257)
chr2 (277-381)||(23863833-23863937)
chr2 (245-336)||(7381695-7381788)
chr2 (237-336)||(21603954-21604055)
chr2 (237-335)||(37357997-37358097)
chr2 (271-385)||(41095812-41095926)
chr2 (268-385)||(4779613-4779730)
chr2 (291-381)||(25275652-25275741)
[»] chr8 (8 HSPs)
chr8 (235-385)||(24337856-24338008)
chr8 (234-385)||(41179589-41179742)
chr8 (259-385)||(4708333-4708459)
chr8 (242-385)||(11254054-11254198)
chr8 (240-336)||(18168383-18168481)
chr8 (240-336)||(18631940-18632038)
chr8 (241-336)||(1514802-1514899)
chr8 (243-336)||(32825910-32826005)
[»] chr6 (6 HSPs)
chr6 (243-385)||(1211870-1212014)
chr6 (236-385)||(5403902-5404053)
chr6 (241-336)||(34245566-34245663)
chr6 (240-305)||(11753165-11753232)
chr6 (268-385)||(32644863-32644979)
chr6 (237-333)||(11113551-11113649)
[»] chr7 (10 HSPs)
chr7 (236-381)||(35341530-35341677)
chr7 (236-335)||(48250148-48250249)
chr7 (260-385)||(32694596-32694721)
chr7 (271-385)||(48072418-48072532)
chr7 (237-336)||(40893116-40893218)
chr7 (246-333)||(31306951-31307041)
chr7 (288-333)||(40856479-40856524)
chr7 (344-381)||(40856949-40856986)
chr7 (235-304)||(40856385-40856456)
chr7 (263-299)||(48072505-48072541)
[»] chr5 (16 HSPs)
chr5 (237-374)||(1826254-1826393)
chr5 (242-336)||(19357336-19357432)
chr5 (247-385)||(33858564-33858704)
chr5 (236-377)||(39570077-39570220)
chr5 (237-385)||(11607560-11607710)
chr5 (241-336)||(38010689-38010786)
chr5 (259-385)||(33271633-33271759)
chr5 (237-336)||(13015376-13015477)
chr5 (235-336)||(29989955-29990058)
chr5 (237-336)||(9827783-9827884)
chr5 (241-335)||(13086752-13086848)
chr5 (241-336)||(13478120-13478217)
chr5 (295-385)||(42148201-42148291)
chr5 (288-336)||(37881189-37881237)
chr5 (232-335)||(10292869-10292968)
chr5 (243-336)||(13421085-13421180)
[»] scaffold0229 (1 HSPs)
scaffold0229 (243-385)||(13031-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (237-375)||(34189-34328)
[»] scaffold0519 (1 HSPs)
scaffold0519 (242-385)||(11195-11339)
[»] scaffold0263 (2 HSPs)
scaffold0263 (270-336)||(23174-23240)
scaffold0263 (236-289)||(23087-23142)
[»] scaffold0041 (1 HSPs)
scaffold0041 (237-336)||(73066-73168)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 37749703 - 37749905
Alignment:
Q  8 ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattactt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37749703 ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattactt 37749802  T
Q  108 ttggtttcaccaaattgattggcaccactggactttgactttaattaattaatgttatcattttacaacttttgttatgaagttatatgatcattctgtt 207  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  37749803 ttggtttcactaaattgattggcaatactggactttgactttaattaattaatgttctcattttactacttttgttttgaagttatatgatcattctgtt 37749902  T
Q  208 tca 210  Q
    |||    
T  37749903 tca 37749905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 37752085 - 37751948
Alignment:
Q  8 ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattactt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37752085 ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattactt 37751986  T
Q  108 ttggtttcaccaaattgattggcaccactggactttga 145  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37751985 ttggtttcaccaaattgattggcaccactggactttga 37751948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 37742633 - 37742770
Alignment:
Q  8 ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattactt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37742633 ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattactt 37742732  T
Q  108 ttggtttcaccaaattgattggcaccactggactttga 145  Q
    |||||||||| |||||||||||||  ||||||||||||    
T  37742733 ttggtttcactaaattgattggcaatactggactttga 37742770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 237 - 385
Target Start/End: Original strand, 12473699 - 12473849
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12473798  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       |||||||||| |||||| ||||||||||||| ||||||||||    
T  12473799 tatttttttaaagggtgtggcacatgacacattctaattgagcaatggtat 12473849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 237 - 385
Target Start/End: Original strand, 12528108 - 12528258
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12528207  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       |||||||||| |||||| ||||||||||||| ||||||||||    
T  12528208 tatttttttaaagggtgtggcacatgacacattctaattgagcaatggtat 12528258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 33249544 - 33249404
Alignment:
Q  243 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnn 340  Q
    ||||||||||||||||  |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||        
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatatt 33249445  T
Q  341 nnnaaagggtgtgccacatggcacattctaattgggcaatg 381  Q
       |||||||||||||||||||||| |||||||| ||||||    
T  33249444 tttaaagggtgtgccacatggcacaatctaattgagcaatg 33249404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 21260789 - 21260935
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| |||||| | ||||||||  |||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 21260888  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatg 381  Q
    ||       ||||||||||||||||||||||||||||||||| ||||    
T  21260889 tatttttttaaagggtgtgccacatggcacattctaattgggtaatg 21260935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 385
Target Start/End: Complemental strand, 35869742 - 35869597
Alignment:
Q  242 ccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannn 339  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| |||| ||| |||||||||||||       
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatactt 35869643  T
Q  340 nnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
        |||||||||||||| || |||||||||||||  |||||||||    
T  35869642 ttttaaagggtgtgccacgtgacacattctaattgaacaatggtat 35869597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 374
Target Start/End: Original strand, 22343337 - 22343471
Alignment:
Q  242 ccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannn 339  Q
    |||||||||||||||||  |||  ||||||||||| ||||| |||||||||||||| || ||| ||||||||||||||| |||||||||||||||||       
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatatta 22343436  T
Q  340 nnnnaaagggtgtgccacatggcacattctaattg 374  Q
        ||||| ||||||||||| |||||||||||||    
T  22343437 ttttaaaggatgtgccacatgacacattctaattg 22343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 52910226 - 52910126
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||||| |||||||||||||| |  |||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  52910226 gggataacacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgat 52910127  T
Q  334 a 334  Q
    |    
T  52910126 a 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 52012772 - 52012874
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||| ||||||||||||||||||  |||| |||| |||||| ||||| ||||| | |||||||||| |||||||||||||||||| ||| ||||||||||    
T  52012772 gggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgat 52012871  T
Q  334 ata 336  Q
    |||    
T  52012872 ata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 385
Target Start/End: Original strand, 51811951 - 51812059
Alignment:
Q  277 attggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacattctaattggg 376  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||  ||| |||||||||       |||||||||||||  || ||||||||||||||     
T  51811951 attggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatatttttttaaagggtgtgccatgtgacacattctaattgga 51812050  T
Q  377 caatggtat 385  Q
     ||||||||    
T  51812051 taatggtat 51812059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 55590477 - 55590559
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttat 317  Q
    |||| |||||||||||||||||  |||| ||||||||||| |||||  |||||| |||||| |||||||||||||||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 49999764 - 49999663
Alignment:
Q  237 ggataccacttgtgtaccattag--tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||| |||||||||||||| |   |||||||| ||| |  |||||| ||||||||||||| ||| ||||||||||| |||||| |||||||||||||||    
T  49999764 ggataacacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgata 49999665  T
Q  335 ta 336  Q
    ||    
T  49999664 ta 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 1796163 - 1796222
Alignment:
Q  271 tataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttattt 330  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||| ||| |||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgttactttataaatgttttattt 1796222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 9799536 - 9799438
Alignment:
Q  240 taccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    |||||||||| ||||||||  |||| |||| |||||| ||||| ||||  ||| |||||||| |||||||||||||||||| ||| ||||||| |||||    
T  9799536 taccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 34829235 - 34829168
Alignment:
Q  259 gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgcttt 326  Q
    |||| |||| |||||| || |||||||||| |||||| |||||||||||||||||||||| |||||||    
T  34829235 gtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 37733134 - 37733069
Alignment:
Q  58 gtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcaccaaatt 123  Q
    |||||||||||||||  |  |||||||||||||||||||||||||||| ||||| || ||||||||    
T  37733134 gtcttgtgttagagtggtggttggaggttggatggctatggctattacctttggcttaaccaaatt 37733069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 46719954 - 46720023
Alignment:
Q  264 aatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||| |||||| ||||| ||||| |||||||||||| ||| |||||||||||||| || |||||||||||    
T  46719954 aatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 35781021 - 35781054
Alignment:
Q  352 tgccacatggcacattctaattgggcaatggtat 385  Q
    |||||| |||||||||||||||||||||||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtat 35781054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 35781063 - 35781027
Alignment:
Q  263 taatggtatataccattggccaattagagtgtgccac 299  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  35781063 taatggtatataccattgcccaattagaatgtgccac 35781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 237 - 385
Target Start/End: Complemental strand, 29119500 - 29119350
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgata 29119401  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       ||||||||||||||||||||||||||||||||||||| ||||    
T  29119400 tatttttttaaagggtgtgccacatggcacattctaattgggcaattgtat 29119350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 237 - 385
Target Start/End: Original strand, 32676131 - 32676281
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| |||||||||||||||||  |||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||||    
T  32676131 ggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgata 32676230  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       ||||  |||||||||||||||| ||||||||| |||||||||    
T  32676231 tatttttttaaagcatgtgccacatggcacaatctaattggacaatggtat 32676281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 385
Target Start/End: Original strand, 2569037 - 2569181
Alignment:
Q  242 ccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannn 339  Q
    |||||||||||||||||  |||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||   |||||||||||||||||       
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata-tt 2569135  T
Q  340 nnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
        |||||||||||||  ||||||||||||||| |||||| ||||    
T  2569136 ttttaaagggtgtgccatgtggcacattctaattaggcaatagtat 2569181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 8809819 - 8809715
Alignment:
Q  234 ttgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttg 331  Q
    |||||| ||||||||||||||||||  |||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||| ||||||||    
T  8809819 ttgggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttg 8809720  T
Q  332 atata 336  Q
    |||||    
T  8809719 atata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 385
Target Start/End: Complemental strand, 46435629 - 46435491
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||||||||||||||||||||  |||| |||||||||||| ||||||||||||||||| | |||||            |||||||||||||||||||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct------------ttatagatgctttatttgata 46435542  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       |||||||||| |||||| ||||||||||||||||||||||||    
T  46435541 tatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtat 46435491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 333
Target Start/End: Original strand, 25161303 - 25161402
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    ||||| |||||||||||||||||  ||   ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||    
T  25161303 gggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 8462146 - 8462273
Alignment:
Q  258 agtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccac 357  Q
    ||||| ||||||||||| |||||  |||||| |||||||||||||||||||||| |||||| ||| ||||||| |||||       |||||| |||||||    
T  8462146 agtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatacttttttaaagggcgtgccac 8462245  T
Q  358 atggcacattctaattgggcaatggtat 385  Q
     || |||||| ||||||| |||||||||    
T  8462246 gtgacacattttaattggacaatggtat 8462273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 332
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  269 tatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttga 332  Q
    |||||| ||||| ||||||||||||| | ||||||||||||||||||||| ||| |||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 7214578 - 7214504
Alignment:
Q  246 ttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 318  Q
    |||||||||||||  |||||||| |||||||  ||||| ||||||||||||| |||||| | || ||||||||||    
T  7214578 ttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttata 7214504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 235 - 385
Target Start/End: Original strand, 47426343 - 47426495
Alignment:
Q  235 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttga 332  Q
    ||||||||||||||||||||||||  |||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  47426343 tgggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttga 47426442  T
Q  333 tatannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||||       |||||||||||||||||| |||||||||||||||||||||||    
T  47426443 tatatttttttaaagggtgtgccacatggtacattctaattgggcaatggtat 47426495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 33509675 - 33509813
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||| || |||||||||||||  |||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  33509675 ggatatcatttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatg 33509774  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaatt 373  Q
    ||       ||||| ||||||||||||||||||||||||    
T  33509775 tatttttttaaaggatgtgccacatggcacattctaatt 33509813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 237 - 385
Target Start/End: Original strand, 44380249 - 44380399
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| |||||||||||||||||  |||| |||||||||||| |||| ||||||| |||||| |||||| |||| |||||||||| |||||||||||||||    
T  44380249 ggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgata 44380348  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       |||||||||||||| || |||||||||||||| |||||||||    
T  44380349 tacttttttaaagggtgtgccacgtgacacattctaattggacaatggtat 44380399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  243 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 37742744 - 37742870
Alignment:
Q  259 gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccaca 358  Q
    |||| ||||||||||| |||||| |||||||||| ||||||||||||||||||| |||   |||||||||||||||||       |||| |||||||||     
T  37742744 gtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatatttttttaaagagtgtgccacg 37742843  T
Q  359 tggcacattctaattgggcaatggtat 385  Q
    ||||||||| |||||||||||||||||    
T  37742844 tggcacattataattgggcaatggtat 37742870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 47186169 - 47186271
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||| ||||||||||||||||||  |||| |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||| || |||||||||||    
T  47186169 gggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgat 47186268  T
Q  334 ata 336  Q
    |||    
T  47186269 ata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 31187242 - 31187145
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||| ||||||||||  |||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  31187242 accacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaa 306  Q
    |||| |||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 32319543 - 32319468
Alignment:
Q  235 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatg 308  Q
    |||||| | |||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  32319543 tgggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 42664672 - 42664769
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||||  |||| || | |||||| ||||| ||||| |||||||||||| ||||||||||| |||||| ||| |||||||||||||    
T  42664672 accacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 17466297 - 17466369
Alignment:
Q  264 aatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||| |||||| ||||||||||||| |||||| ||||||||||||||| ||| |||| ||||||||    
T  17466297 aatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatata 17466369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 34029463 - 34029366
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||| ||||||||  |||| |||| |||||| |||||  |||| |||||||||||| ||| |||||||||||||| ||| |||||||||||||    
T  34029463 accacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 35094572 - 35094689
Alignment:
Q  266 tggtatataccattggccaatta--gagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggca 363  Q
    ||||||||||||||| | |||||  |||| ||||||||||||||||||||||||| ||  |||||||||||||       ||||| |||| ||| || ||    
T  35094572 tggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatatttttttaaaggatgtgtcacgtgaca 35094671  T
Q  364 cattctaattgggcaatg 381  Q
    |||||||||||| |||||    
T  35094672 cattctaattggacaatg 35094689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 10018742 - 10018671
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaa 306  Q
    |||| |||||||||||||||||  |||| |||| ||||||||||||| |||| | |||||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 237 - 385
Target Start/End: Complemental strand, 34392257 - 34392107
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgata 34392158  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       |||||||||||||||||||||| ||||||||| |||||||||    
T  34392157 tatttttttaaagggtgtgccacatggcacaatctaattggacaatggtat 34392107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 23863937 - 23863833
Alignment:
Q  277 attggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacattctaattggg 376  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||     
T  23863937 attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgccacatggcacattctaattgga 23863838  T
Q  377 caatg 381  Q
    |||||    
T  23863837 caatg 23863833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 7381695 - 7381788
Alignment:
Q  245 cttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||  |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata 7381788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 21603954 - 21604055
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| |||||||||||||||||  |||| ||||||||||||||||| ||||||| |||||  |||||||||||||||||||||| ||| |||||||||||    
T  21603954 ggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgata 21604053  T
Q  335 ta 336  Q
    ||    
T  21604054 ta 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 335
Target Start/End: Complemental strand, 37358097 - 37357997
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| ||||||||||| |||||  |||| |||| |||||||||||| | |||||||||||| |||||| ||||||||||||||| ||||||||||| |||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaata 37357998  T
Q  335 t 335  Q
    |    
T  37357997 t 37357997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 385
Target Start/End: Complemental strand, 41095926 - 41095812
Alignment:
Q  271 tataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacattcta 370  Q
    ||||| ||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||| |       ||| ||| ||||||||||||||  |||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacacccta 41095827  T
Q  371 attgggcaatggtat 385  Q
    | ||| |||||||||    
T  41095826 aatggccaatggtat 41095812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 4779613 - 4779730
Alignment:
Q  268 gtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacatt 367  Q
    |||||||||||||  || ||| |||||||| |||| ||||||||||||||| || ||||||||||||||       ||||| |||| ||| || ||||||    
T  4779613 gtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgacacatt 4779712  T
Q  368 ctaattgggcaatggtat 385  Q
    |||||||| |||||||||    
T  4779713 ctaattggacaatggtat 4779730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 25275741 - 25275652
Alignment:
Q  291 gtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacattctaattgggcaatg 381  Q
    |||||||||||| |||||||||||| || || ||||||||||||||       ||||| |||||||| ||  ||||||||||||| |||||    
T  25275741 gtgtgccacctatcaatgttacttt-taaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatg 25275652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 235 - 385
Target Start/End: Complemental strand, 24338008 - 24337856
Alignment:
Q  235 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttga 332  Q
    ||||||||||||||||||| ||||  |||  ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24338008 tgggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttga 24337909  T
Q  333 tatannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||||       |||||||||||||||| ||||||||||||||| |||||||||    
T  24337908 tatatatttttaaagggtgtgccacatagcacattctaattggacaatggtat 24337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 41179742 - 41179589
Alignment:
Q  234 ttgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttg 331  Q
    ||||||| |||||||||||||||||  |||| |||| |||||| ||||||||||||| |||||| |||||||| ||||||||||||| ||| |||||||     
T  41179742 ttgggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttattta 41179643  T
Q  332 atatannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    |||||       || || ||||||||||||||||||||||||||||||||||||    
T  41179642 atatatttttttaatggatgtgccacatggcacattctaattgggcaatggtat 41179589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 385
Target Start/End: Complemental strand, 4708459 - 4708333
Alignment:
Q  259 gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccaca 358  Q
    |||| ||||| ||||| |||  |||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||       ||||||||||||||     
T  4708459 gtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaagggtgtgccacg 4708360  T
Q  359 tggcacattctaattgggcaatggtat 385  Q
    ||||||||||||||| |||||||||||    
T  4708359 tggcacattctaattaggcaatggtat 4708333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 385
Target Start/End: Complemental strand, 11254198 - 11254054
Alignment:
Q  242 ccacttgtgtaccattag--tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannn 339  Q
    |||||||||||||||||   ||| |||| |||||| ||||| ||| ||| ||| | ||||||||||||||||||||||| ||| |||||||||||||       
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacat 11254100  T
Q  340 nnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
        |||||||||||||| || |||||||||| || ||||||||||    
T  11254099 ttttaaagggtgtgccacgtgacacattctaactgagcaatggtat 11254054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 18168383 - 18168481
Alignment:
Q  240 taccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    |||||| | ||||||||||  |||| ||||||||||| |||||  |||||||||||| |||||||||||| |||||||||| || ||||||||||||||    
T  18168383 taccacctctgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 18631940 - 18632038
Alignment:
Q  240 taccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    |||||| | ||||||||||  |||| ||||||||||| |||||  |||||||||||| |||||||||||| |||||||||| || ||||||||||||||    
T  18631940 taccacctctgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 1514802 - 1514899
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||||  |||| |||| |||||| |||||  |||| ||||||| |||| |||||||||||||||||| ||| |||||||||||||    
T  1514802 accacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 32826005 - 32825910
Alignment:
Q  243 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||  |||  |||| | |||||||||||||||||||||| || ||| || |||||||| ||||||  || |||||||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatata 32825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 243 - 385
Target Start/End: Complemental strand, 1212014 - 1211870
Alignment:
Q  243 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnn 340  Q
    ||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||||||||  |||||||||||||| ||||||||||||||||||        
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 1211915  T
Q  341 nnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
       |||||||||||||| |||||||||||||| ||||||||||||    
T  1211914 tttaaagggtgtgccacgtggcacattctaatggggcaatggtat 1211870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 236 - 385
Target Start/End: Complemental strand, 5404053 - 5403902
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||||||||||||||||||||||  ||||||||||||||||  ||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  5404053 gggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgat 5403954  T
Q  334 atannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    |||       |||||| ||  |||||| |||||||||||||| |||||||||    
T  5403953 atatttttttaaagggcgtatcacatgacacattctaattggacaatggtat 5403902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 34245566 - 34245663
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||||  ||| ||||| |||||| ||||| ||||| | |||||||||| |||||||||||||||||| || ||||||||||||||    
T  34245566 accacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 11753165 - 11753232
Alignment:
Q  240 taccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacca 305  Q
    |||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  11753165 taccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 385
Target Start/End: Complemental strand, 32644979 - 32644863
Alignment:
Q  268 gtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacatt 367  Q
    ||||||| |||||||||||||  ||||| ||||||| |||||||||||| | || ||||||||| ||||       |||||||||||||||||  ||| |    
T  32644979 gtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgttatatttttttaaagggtgtgccacatgatacaat 32644881  T
Q  368 ctaattgggcaatggtat 385  Q
    |||||||  |||||||||    
T  32644880 ctaattgaacaatggtat 32644863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 11113551 - 11113649
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    ||||| ||||||||||||||||  |||| |||| |||||| ||||| | ||| |||||||| ||| ||| ||||||||||| ||  |||||||||||||    
T  11113551 ggataacacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat 11113649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 35341530 - 35341677
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    ||||| |||||||||||||||||  |||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  35341530 gggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgat 35341629  T
Q  334 atannnnnnnaaagggtgtgccacatggcacattctaattgggcaatg 381  Q
    |||       |||||||||||||| || |||||||||||||| |||||    
T  35341630 atacttttttaaagggtgtgccacgtgacacattctaattggacaatg 35341677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 48250148 - 48250249
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||||||||||||||||||||||  |||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48250148 gggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 48250247  T
Q  334 at 335  Q
    ||    
T  48250248 at 48250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 260 - 385
Target Start/End: Complemental strand, 32694721 - 32694596
Alignment:
Q  260 tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacat 359  Q
    |||||||| |||||||||||||  ||||||||||| ||| ||| ||||||||||||||| || ||||||||||||||       |||||||||||||| |    
T  32694721 tactaatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgt 32694622  T
Q  360 ggcacattctaattgggcaatggtat 385  Q
    | |||||||||||| |||||||||||    
T  32694621 gacacattctaattaggcaatggtat 32694596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 385
Target Start/End: Original strand, 48072418 - 48072532
Alignment:
Q  271 tataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacattcta 370  Q
    ||||||||||  ||||||||||||||||| |  |||||||| |||||| ||  |||||||||| ||       |||||||||||||| ||||||||||||    
T  48072418 tataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtatttttttaaagggtgtgccacgtggcacattcta 48072517  T
Q  371 attgggcaatggtat 385  Q
    |||||||||||||||    
T  48072518 attgggcaatggtat 48072532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 40893218 - 40893116
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgc-tttatttgat 333  Q
    ||||||||||||| |||||| |  ||| ||||||||||||||||||| |||||||| |||  || ||| ||||||||||||||| |||| ||||||||||    
T  40893218 ggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgat 40893119  T
Q  334 ata 336  Q
    |||    
T  40893118 ata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  246 ttgtgtaccatta--gtactaatggtatataccattggccaatt-agagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||||||||||||  |||  |||| |||||| ||||| |||||| | ||||||| ||||||||||||||||||||| ||||||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 40856479 - 40856524
Alignment:
Q  288 agagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||    
T  40856479 agagtgtgtcacctaccaatgttattttatagatgttttatttgat 40856524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 40856949 - 40856986
Alignment:
Q  344 aaagggtgtgccacatggcacattctaattgggcaatg 381  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatg 40856986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 40856385 - 40856456
Alignment:
Q  235 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 304  Q
    ||||||||||||| |||| |||||  ||||||||| ||||||  ||||  ||||||||||||| ||||||||    
T  40856385 tgggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 48072541 - 48072505
Alignment:
Q  263 taatggtatataccattggccaattagagtgtgccac 299  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48072541 taatggtatataccattgcccaattagaatgtgccac 48072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 237 - 374
Target Start/End: Original strand, 1826254 - 1826393
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgata 1826353  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattg 374  Q
    ||       ||||  |||||||||||||||||| ||||||    
T  1826354 tatttttttaaagtatgtgccacatggcacattttaattg 1826393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 336
Target Start/End: Complemental strand, 19357432 - 19357336
Alignment:
Q  242 ccacttgtgtaccattag--tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata 19357336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 247 - 385
Target Start/End: Complemental strand, 33858704 - 33858564
Alignment:
Q  247 tgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnna 344  Q
    ||||||||||||  |||| ||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||       |    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  345 aagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattgggcaatggtat 33858564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 377
Target Start/End: Complemental strand, 39570220 - 39570077
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 333  Q
    ||||| ||||||||||| |||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||    
T  39570220 gggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgat 39570121  T
Q  334 atannnnnnnaaagggtgtgccacatggcacattctaattgggc 377  Q
    |||       |||||||||||||| || || |||||||||||||    
T  39570120 atacttttttaaagggtgtgccacctgacatattctaattgggc 39570077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 237 - 385
Target Start/End: Complemental strand, 11607710 - 11607560
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| |||||||| ||||||||  |||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||| |||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgata 11607611  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    ||       ||||||||||||||  | |||||||||||||| |||||||||    
T  11607610 tacttttttaaagggtgtgccacgggccacattctaattggacaatggtat 11607560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 38010786 - 38010689
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||||  |||| |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||    
T  38010786 accacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 33271633 - 33271759
Alignment:
Q  259 gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccaca 358  Q
    |||| |||| |||||| |||||||||||||||||||| || ||| ||||||||||| ||| |||||||||||||||||       ||||| || |||||     
T  33271633 gtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgccacg 33271732  T
Q  359 tggcacattctaattgggcaatggtat 385  Q
    |||||||||||||||||||||| ||||    
T  33271733 tggcacattctaattgggcaatagtat 33271759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 13015376 - 13015477
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    ||||||||||||||||||||||  |||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||  |||||||||||    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgata 13015475  T
Q  335 ta 336  Q
    ||    
T  13015476 ta 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 29989955 - 29990058
Alignment:
Q  235 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttga 332  Q
    ||||| ||||||||||||||||||  |||  |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||| |||||||||    
T  29989955 tgggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttga 29990054  T
Q  333 tata 336  Q
    ||||    
T  29990055 tata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 9827783 - 9827884
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| |||||||||||||||||  |||| ||||||||||||| || | |||||||||||| |||||||||||| |||||||||| ||  |||||||||||    
T  9827783 ggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgata 9827882  T
Q  335 ta 336  Q
    ||    
T  9827883 ta 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 13086752 - 13086848
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat 335  Q
    ||||||||||||||||||  |||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||| |||||| ||  ||||||||||||    
T  13086752 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatat 13086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 13478217 - 13478120
Alignment:
Q  241 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||||  | || |||| |||||| ||||| ||||| |||||||||||| ||||| |||||||||||| ||  |||||||||||||    
T  13478217 accacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 42148201 - 42148291
Alignment:
Q  295 gccacctaccaatgttactttatagatgctttatttgatatannnnnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
    |||||||||||||||||||||||| ||| |||||||||||||       ||||||||| |||| | ||||||||||||||  |||||||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtat 42148291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 37881189 - 37881237
Alignment:
Q  288 agagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    |||||||||||| |||||||||||||||||| ||  |||||||||||||    
T  37881189 agagtgtgccacataccaatgttactttataaatattttatttgatata 37881237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 335
Target Start/End: Original strand, 10292869 - 10292968
Alignment:
Q  232 tgttgggataccacttgtgtaccattagtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttg 331  Q
    |||||||||| |||||||||| |||    || |||| |||||| ||||||||||| ||| |||||||| ||| ||||||| ||| ||  || ||||||||    
T  10292869 tgttgggatagcacttgtgtatcat----accaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttg 10292964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 13421180 - 13421085
Alignment:
Q  243 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||||||||||||||  |||  |||| |||||| |||||  |||| |||||||  ||  || ||||||||||||||| ||||||||||| |||||    
T  13421180 cacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatata 13421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 243 - 385
Target Start/End: Complemental strand, 13176 - 13031
Alignment:
Q  243 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannnn 340  Q
    ||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||||||||  |||||||||||||| ||||||||||||||||||        
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 13077  T
Q  341 nnnaaaggg-tgtgccacatggcacattctaattgggcaatggtat 385  Q
       |||||| |||||||| |||||||||||||| ||||||||||||    
T  13076 tttaaagggttgtgccacgtggcacattctaatggggcaatggtat 13031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 375
Target Start/End: Original strand, 34189 - 34328
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 334  Q
    |||| |||||||||||||||||  |||| |||||||||||  ||||||||||||||||||||||| ||||||| |||||||||| ||  |||||||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgata 34288  T
Q  335 tannnnnnnaaagggtgtgccacatggcacattctaattgg 375  Q
    ||       |||||||||| ||| || ||||||||||||||    
T  34289 ta-ttttttaaagggtgtgtcacgtgacacattctaattgg 34328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 385
Target Start/End: Original strand, 11195 - 11339
Alignment:
Q  242 ccacttgtgtaccattag--tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatannn 339  Q
    |||||||||||||||||   ||| |||| |||||| ||||| ||| ||| ||| | ||||||||||||||||||||||| ||| |||||||||||||       
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacat 11293  T
Q  340 nnnnaaagggtgtgccacatggcacattctaattgggcaatggtat 385  Q
        |||||||||||||| || |||||||||| || ||||||||||    
T  11294 ttttaaagggtgtgccacgtgacacattctaactgagcaatggtat 11339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
Q  270 atataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 336  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 23087 - 23142
Alignment:
Q  236 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattag 289  Q
    |||||| |||||||||| |||||  |||| |||||||||||| |||||||||||||    
T  23087 gggataacacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 73066 - 73168
Alignment:
Q  237 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgc-tttatttgat 333  Q
    ||||||||||||| |||||| |  ||| ||||||||||||||||||| |||||||| |||  || ||| ||||||||||||||| |||| ||||||||||    
T  73066 ggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgat 73165  T
Q  334 ata 336  Q
    |||    
T  73166 ata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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