View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9425_low_5 (Length: 294)
Name: NF9425_low_5
Description: NF9425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9425_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 2328967 - 2328704
Alignment:
| Q |
21 |
tattacatcaaaatagcataaattgttcaaatattgtgaaccaagcagcacataaagcacacatgcatttttctaattcaaacttgaaacataaagcaca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2328967 |
tattacatcaaaatagcataaattgttcaaatattgtgaaccaagcagcacataaagcacacatgcatttttctaattcaaacttgaaacataaagcaca |
2328868 |
T |
|
| Q |
121 |
aaacataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2328867 |
aaacataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatct |
2328768 |
T |
|
| Q |
221 |
ttgtaaactacatccataaaacgcgcaaggttgagagcccgggttagaaacggcattggaactt |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2328767 |
ttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactt |
2328704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 14264683 - 14264846
Alignment:
| Q |
123 |
acataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatcttt |
222 |
Q |
| |
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||||||| ||| ||| ||||||||||| |||||| || || || |||| || |||| ||||| || |||||| | | || |||||||||| |||| | |
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| T |
14264683 |
acataaacattgatgctcaaattggaattggatccaccaggacgtctttaatgtatgttttcatgagaccttcaacatgagtatagttatctttatctgt |
14264782 |
T |
|
| Q |
223 |
gtaaactacatccataaaacgcgcaaggttgagagcccgggttagaaacggcattggaacttcg |
286 |
Q |
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| T |
14264783 |
gtaaaacacatccataaaacgcgaaaaattgagagcgcgagttagaaaatccattggaacttcg |
14264846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 25835054 - 25834938
Alignment:
| Q |
168 |
ctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcccgggttag |
267 |
Q |
| |
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|||||| |||| |||||| |||||||||||| ||||||| || |||| |||||||||| |||||||||||||||| || |||||||| || | || |
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| T |
25835054 |
ctttgacatatttcttcataagtccttcagaatgtgtgtaattgtctttatctttgtaattcacatccataaaacgcgaaaaattgagagcacgaataag |
25834955 |
T |
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| Q |
268 |
aaacggcattggaactt |
284 |
Q |
| |
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||| ||||||||||||| |
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| T |
25834954 |
aaaaggcattggaactt |
25834938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 41349259 - 41349369
Alignment:
| Q |
133 |
taatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactaca |
232 |
Q |
| |
|
||||| |||||| || || ||||||||||| | || ||| || ||||||||||| |||||||| | |||| ||||||||| |||||| ||||| ||| |
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| T |
41349259 |
taatgctcaaataggcacgggatcaacaagtaaagatttaatgaatgacttcatttctccttcaggatgtgtaaagttatctttatctttataaaccaca |
41349358 |
T |
|
| Q |
233 |
tccataaaacg |
243 |
Q |
| |
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||||| ||||| |
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| T |
41349359 |
tccatgaaacg |
41349369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 17183401 - 17183287
Alignment:
| Q |
131 |
attaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaacta |
230 |
Q |
| |
|
||||||| ||||||||| || ||||| ||||| | |||||| || |||| ||||||| ||||| |||| | |||||||| ||||||| || |||| || |
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| T |
17183401 |
attaatgctcaaattggcaccggatctacaagcaaagctttaatgtatgtcttcatttctcctttagaatgcgtgtagttgtcttcatgcttataaatta |
17183302 |
T |
|
| Q |
231 |
catccataaaacgcg |
245 |
Q |
| |
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||||||||||||||| |
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| T |
17183301 |
catccataaaacgcg |
17183287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 20621812 - 20621925
Alignment:
| Q |
139 |
tcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccata |
238 |
Q |
| |
|
|||||||||||| |||||||| | || |||| ||| | | ||||||||||| | |||| ||||||||||||||| | ||||||||| ||||||||| |
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| T |
20621812 |
tcaaattggaacaggatcaaccaacacttctttaatacaagtcttcattagtctgttagaatctgtgtagttatcttcgtttttgtaaacaacatccata |
20621911 |
T |
|
| Q |
239 |
aaacgcgcaaggtt |
252 |
Q |
| |
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||||||| |||||| |
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| T |
20621912 |
aaacgcgaaaggtt |
20621925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 20602823 - 20602940
Alignment:
| Q |
139 |
tcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccata |
238 |
Q |
| |
|
|||||||||||| |||||||| | || |||| ||| ||| |||||||||||| | |||| ||||||||||||| | |||||||| ||||||||| |
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| T |
20602823 |
tcaaattggaacaggatcaaccaacacttctttaataaatgtcttcattagtccgttagaatccgtgtagttatctttgtttttgtaaataacatccata |
20602922 |
T |
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| Q |
239 |
aaacgcgcaaggttgaga |
256 |
Q |
| |
|
||||||| ||| |||||| |
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| T |
20602923 |
aaacgcgaaagattgaga |
20602940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 25794490 - 25794373
Alignment:
| Q |
128 |
aaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaa |
227 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | |||||| || ||| ||||||| |||||||| | ||| ||||||||| |||||| |||| |
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| T |
25794490 |
aaaattaatgatcaaattaacactggatctacaagcaaagctttaatgaatgtcttcatttctccttcagtgtgagtgaagttatctttatctttataaa |
25794391 |
T |
|
| Q |
228 |
ctacatccataaaacgcg |
245 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
25794390 |
ctacgtccataaaacgcg |
25794373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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