View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_high_3 (Length: 506)
Name: NF9426_high_3
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Complemental strand, 4374605 - 4374127
Alignment:
| Q |
19 |
ggtaagtgtcgtgtctggtgtctatgtttgtatctgtgttagtgcttcatagcacatttccagccttaattttgagttttcatataaattgttaaactga |
118 |
Q |
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| T |
4374605 |
ggtaagtgtcgtgtctggtgtctatgtttgtatctgtgttagtgcttcatagcacatttccagccttaattttgagttttcatagaaattgttaaactga |
4374506 |
T |
|
| Q |
119 |
aaaggaatagaaataaaagacgggacgttgggatttttaatgtacaagaaaatacctttgaatcaccaatatcttacttctcatacgcctcttttgaatc |
218 |
Q |
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| T |
4374505 |
aaaggagtagaaataaaagacgggacgttgggatttt-aatgtacaagaaaatacctttgaatcaccaatatcttacttctcatacgcctcttttgaatc |
4374407 |
T |
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| Q |
219 |
agacattgataaaaggaagcagatccaaaccatgtgactattaaggcacacatgataattgacgcattcttcatacgaactcaacctgctacaagggatt |
318 |
Q |
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| T |
4374406 |
agacattgataaaaggaagcagatccaaaccatgtgaccattaaggcacacatgataattgacgcattcttcatacgaactcaacctgtaacaagggatt |
4374307 |
T |
|
| Q |
319 |
tgcgctatcatattagcctacagcatgctccacaacctcaccttgcaatacagacaaacctttgtcggattgaggtgagtgcgtctgttaataagcatcc |
418 |
Q |
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| T |
4374306 |
tgcgctatcatattagcctacagcatgctccacaacctcgccttgcaatacagacaaacctttgtcagattgaggtgagcgcgtctgttaataagcatcc |
4374207 |
T |
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| Q |
419 |
tcttgacatgcgtagttgcaaacggtaaacatcaagaccaatattcacaaaaattatcagttcattaaagctgatctctg |
498 |
Q |
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| T |
4374206 |
tcttgacatgcgtagttgcaaacggtaaacatcaagaccaatattcacaaaaattatcagttcattaaagctgatctctg |
4374127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 41 - 452
Target Start/End: Complemental strand, 4382817 - 4382407
Alignment:
| Q |
41 |
tatgtttgtatctgtgttagtgcttcatagcacatttccagccttaattttgagttttcatataaattgttaaactgaaaaggaatagaaataaaagacg |
140 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||||| || |
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| T |
4382817 |
tatgtttgtatctgtgttggtgtttcatagcacatttccagccttaattttgatatttcatagaaattgttaaactggaaaagaataaaaataaaaggcg |
4382718 |
T |
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| Q |
141 |
ggacgttgggatttttaatgtacaagaaaatacctttgaatcaccaatatcttacttctcatacgcctcttttgaatcagacattgataaaaggaagcag |
240 |
Q |
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| T |
4382717 |
ggacgttgggatttttcatgtacaagaaaataccttagaatcatca---tcttagccctcgtacgcctcttctgaatcagacaatggttaatgggagcag |
4382621 |
T |
|
| Q |
241 |
atccaaaccatgtgactattaaggcacacatgataattgacgcattcttcatacgaactcaacctgctacaagggatttgcgctatcatattagc--cta |
338 |
Q |
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| T |
4382620 |
atccaaaccatgtgaccattgaggcacacatgacaattgacgcattcatcacacgaagtcaacctgcaacaagggttttgtggtatcatattagcgccta |
4382521 |
T |
|
| Q |
339 |
cagcatgctccacaacctcaccttgcaatacagacaaacctttgtcggattgaggtgagtgcgtctgttaataagcatcctcttgacatgcgtagttgca |
438 |
Q |
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| T |
4382520 |
cagcatgatccacaacctcgttttacaatacagacaaacctctgtcggatggaggtgagcgcctctggtaataagcatcctctggacattcgtagttgca |
4382421 |
T |
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| Q |
439 |
aacggtaaacatca |
452 |
Q |
| |
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| T |
4382420 |
aacggtaaacatca |
4382407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 237 - 440
Target Start/End: Complemental strand, 4355839 - 4355636
Alignment:
| Q |
237 |
gcagatccaaaccatgtgactattaaggcacacatgataattgacgcattcttcatacgaactcaacctgctacaagggatttgcgctatcatattagcc |
336 |
Q |
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|||||| | ||||||||| | |||||||||||||||||||| || ||||||||||| |||| |||||| | || || | |||| | |||||||||||| |
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| T |
4355839 |
gcagattccaaccatgtgtccattaaggcacacatgataatcaacacattcttcatatgaacccaacctacaactagcggtttgtggaatcatattagcc |
4355740 |
T |
|
| Q |
337 |
tacagcatgctccacaacctcaccttgcaatacagacaaacctttgtcggattgaggtgagtgcgtctgttaataagcatcctcttgacatgcgtagttg |
436 |
Q |
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| T |
4355739 |
tgcagcatgctccacaacctcgccttacaataaggacaaacctctgtcggatggagctgagcgcctttgttaatgagcatcctcctgacatttgtagttg |
4355640 |
T |
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| Q |
437 |
caaa |
440 |
Q |
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|||| |
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| T |
4355639 |
caaa |
4355636 |
T |
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