View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_high_8 (Length: 405)
Name: NF9426_high_8
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 41130932 - 41131301
Alignment:
| Q |
6 |
acatactttgacccaatgatgtactgatcccgctcacagcagaaaggactgcatatataaataaaaatattatgattgtatcaagctgatcatatatata |
105 |
Q |
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| T |
41130932 |
acatactttgacccaatgatgtactgatcccgctcacagcagaaaggactgcata---aaataaaaatattatgattgtatcaaa--gctcatacata-- |
41131024 |
T |
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| Q |
106 |
aatacaactcagcaagtattaaattgttaaactatatatttctttataacgaccaacctgaaatggagggagtgagaatcccatctcctatgaccatggc |
205 |
Q |
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| T |
41131025 |
----caactca---agtattaaattgttaaactatttattt----ataac---caacctgaaatggagggagtgagaatcccatctcctatgaccatggc |
41131110 |
T |
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| Q |
206 |
agtacccattatagctagaagcaaaagtataattcgtgcaaaatgactattctcaagcatttgtttcagtttatgggctcttttcagctggctagatggt |
305 |
Q |
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| T |
41131111 |
agtacccattatagctagaagtaaaagtataattcgtgcaaaatgactattctcaagcatttgtttcagtttatgggctcttttctgctggctagatggt |
41131210 |
T |
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| Q |
306 |
atttctagtttgtaattagagagttccatgtcttcaggttgttgattgggagccgaactcatctttatatgcctacatatcaacgagtata |
396 |
Q |
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| T |
41131211 |
atttctagtttgtaattagagagttccatgtcttcaggttgttgattgggagccaaactcatctttatatgcctacatatcaacgagtata |
41131301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 7798769 - 7798713
Alignment:
| Q |
296 |
gctagatggtatttctagtttgtaattagagagttccatgtcttcaggttgttgatt |
352 |
Q |
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| T |
7798769 |
gctagatggtgtttctaatttgtagttagaaagctccatgtcctctggttgttgatt |
7798713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 7818040 - 7817984
Alignment:
| Q |
296 |
gctagatggtatttctagtttgtaattagagagttccatgtcttcaggttgttgatt |
352 |
Q |
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| T |
7818040 |
gctagatggtgtttctaatttgtagttagaaagctccatgtcctctggttgttgatt |
7817984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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