View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9426_low_1 (Length: 602)

Name: NF9426_low_1
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9426_low_1
NF9426_low_1
[»] chr2 (5 HSPs)
chr2 (399-597)||(40928800-40929008)
chr2 (17-182)||(40925510-40925675)
chr2 (181-345)||(40925872-40926032)
chr2 (114-156)||(40926018-40926060)
chr2 (289-335)||(40925653-40925699)
[»] chr1 (5 HSPs)
chr1 (399-597)||(48504757-48504965)
chr1 (27-144)||(6717069-6717189)
chr1 (201-267)||(6716248-6716313)
chr1 (289-333)||(6717199-6717243)
chr1 (23-69)||(6716452-6716497)
[»] chr8 (1 HSPs)
chr8 (25-140)||(44313626-44313741)
[»] chr6 (1 HSPs)
chr6 (25-140)||(34099151-34099266)
[»] scaffold0086 (1 HSPs)
scaffold0086 (23-140)||(40788-40905)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 9e-84; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 399 - 597
Target Start/End: Original strand, 40928800 - 40929008
Alignment:
Q  399 tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactagatttcaattacattatctcaattacagtttgact 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40928800 tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactggatttcaattacattatctcaattacagtttgact 40928899  T
Q  499 tggatataca----------ttatgtctaaattgtatttttcttggagtgtgtttgtgtacaattgtttatgtctgcaaaattgtcttcaggttgatttt 588  Q
    ||||||||||          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40928900 tggatatacatgataaatgcttatgtataaattgtatttttcttggagtgtgtttgtgtacaattgtttatgtctgcaaaattgttttcaggttgatttt 40928999  T
Q  589 tcctttgct 597  Q
     ||||||||    
T  40929000 gcctttgct 40929008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 40925510 - 40925675
Alignment:
Q  17 caaccgtgtatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  40925510 caaccgtgtatttcagaaacattgaatcccatgtttcttttgcttccttgtactggaaatacacattgaacaactcgttagataagatactcataacagt 40925609  T
Q  117 gtgacgacataccttatttgcatgagtccatgtctcaactagccaacttgtttcggtgttgatgaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925610 gtgacgacataccttatttgcatgagtccatgtctcaactagccaacttgtttcggtgttgatgaa 40925675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 181 - 345
Target Start/End: Original strand, 40925872 - 40926032
Alignment:
Q  181 aattccgtggcctataaaaaattgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgacttacgtggtgtacgtt 280  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  40925872 aattccgtggcgtataaaaaattgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgacttacgtggt----gtt 40925967  T
Q  281 gcttttaccctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttgagacatggac 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925968 gcttttaccctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttgagacatggac 40926032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 40926060 - 40926018
Alignment:
Q  114 agtgtgacgacataccttatttgcatgagtccatgtctcaact 156  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  40926060 agtgtgacgacataccttatttgtatgagtccatgtctcaact 40926018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 40925699 - 40925653
Alignment:
Q  289 cctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttg 335  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||    
T  40925699 cctcactacctcaaacccactttcttcatcaacaccgaaacaagttg 40925653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 399 - 597
Target Start/End: Complemental strand, 48504965 - 48504757
Alignment:
Q  399 tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactagatttcaattacattatctcaattacagtttgact 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48504965 tatggtttggctctgttttgatgctaatggttttgatatttcccttttggttattataacaactggatttcaattacattatctcaattacagtttgact 48504866  T
Q  499 tggatataca----------ttatgtctaaattgtatttttcttggagtgtgtttgtgtacaattgtttatgtctgcaaaattgtcttcaggttgatttt 588  Q
    ||||||||||          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  48504865 tggatatacatgataaatgcttatgtataaattgtatttttcttggagtgtgtttgtgtacaattgtttatgtctgcaaaattgttttcgggttgatttt 48504766  T
Q  589 tcctttgct 597  Q
     ||||||||    
T  48504765 gcctttgct 48504757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 6717069 - 6717189
Alignment:
Q  27 tttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttag--ataagataatcataacagtgtgacgac 124  Q
    |||||||| ||||||||||||| || |||| ||||||||||||  ||| ||||||| ||| ||||| ||||  ||||| || |||||| ||||||| | |    
T  6717069 tttcagaaccattgaatcccatattcctttcgcttccttgtacgagaagtacacatggaacaactcattagatataaggtactcataatagtgtgatggc 6717168  T
Q  125 atacctt-atttgcatgagtc 144  Q
    ||||||| |||||||||||||    
T  6717169 ataccttaatttgcatgagtc 6717189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 6716248 - 6716313
Alignment:
Q  201 attgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgactta 267  Q
    |||||||||||||||||||||||| |||  ||| |||||||||| ||| ||||||||||||||||||    
T  6716248 attgaagtctttgctggtcagaat-tttcgaagatggcaggagcggattaattcaacacttgactta 6716313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 6717243 - 6717199
Alignment:
Q  289 cctcactacctcaaagccaccgtcttcatcaacaccgaaacaagt 333  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||    
T  6717243 cctcactacctcaaagccaccttcttaatcaacatcgaaacaagt 6717199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 6716497 - 6716452
Alignment:
Q  23 tgtatttcagaaacattgaatcccatgtttcttttgcttccttgtac 69  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  6716497 tgtatttca-aaacattgaatcccatatttctttcgcttccttgtac 6716452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 44313741 - 44313626
Alignment:
Q  25 tatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagtgtgacgac 124  Q
    |||||||||| ||| ||||||||| |||| || ||||||||||||    | || |||| ||| ||||| ||||| ||| || |||||| |||||||||||    
T  44313741 tatttcagaaccatggaatcccatatttccttcgcttccttgtacgaacagtagacatcgaataactcattagacaaggtagtcataatagtgtgacgac 44313642  T
Q  125 ataccttatttgcatg 140  Q
    ||||||||||||||||    
T  44313641 ataccttatttgcatg 44313626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 34099151 - 34099266
Alignment:
Q  25 tatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagtgtgacgac 124  Q
    |||||||||| ||| ||||||||| |||| || ||||||||||||    | || |||| ||| ||||| ||||| ||| || |||||| |||||||||||    
T  34099151 tatttcagaaccatggaatcccatatttccttcgcttccttgtacgaacagtagacatcgaataactcattagacaaggtagtcataatagtgtgacgac 34099250  T
Q  125 ataccttatttgcatg 140  Q
    ||||||||||||||||    
T  34099251 ataccttatttgcatg 34099266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 40788 - 40905
Alignment:
Q  23 tgtatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagtgtgacg 122  Q
    |||||||||||| ||| ||||||||| |||| || ||||||||||||    | || |||| ||| ||||| ||||| ||| || |||||| |||||| ||    
T  40788 tgtatttcagaaccatggaatcccatatttccttcgcttccttgtacgaacagtagacatcgaataactcattagacaaggtagtcataatagtgtggcg 40887  T
Q  123 acataccttatttgcatg 140  Q
    ||||||||||||||||||    
T  40888 acataccttatttgcatg 40905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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