View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_12 (Length: 418)
Name: NF9426_low_12
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 48269302 - 48269685
Alignment:
| Q |
19 |
gctgacctgactaggacttgtacattcatattgaaaattagttatgtttatattttgtccttctatttatccatcaattttccgtcaatgcttaaattac |
118 |
Q |
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| T |
48269302 |
gctgacctgactaggacttgtacattcatattgaaaattagttatgtttatattttgtccttctatttatacatcaattttccgtcaatgcttaaattac |
48269401 |
T |
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| Q |
119 |
tgnnnnnnnnaactgatttatcacaacacactagtgtttatacattatttgttgaaaatattactatgctcgtgtacgaccgatgtgaaagaacttaaca |
218 |
Q |
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| T |
48269402 |
tgttttttttaactgatttatcacaacacactagtgtttatacattatttgttgaaaatattactatgctcgtgtacgaccgatgtgaaagaacttaaca |
48269501 |
T |
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| Q |
219 |
acattcacttgcattttttctctgaagctgtctttattggttagcgactatatatcacaatgtccattattacttttcaattagactgtttcaaatccct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48269502 |
acattcacttgcattttttctctgaagctgtctttattggttagcgactatatatcacaatgtccattattacttttcaattagactgtttcaaatccct |
48269601 |
T |
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| Q |
319 |
tttcaaatatagaagattgggaaagaaatttaattaagaatagctatgcatttatttctcagtcattctggatctagccaccat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48269602 |
tttcaaatatagaagattgggaaagaaatttaattaagaatagctatgcatttatttctcagtcattcttgatctagccaccat |
48269685 |
T |
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