View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9426_low_17 (Length: 401)
Name: NF9426_low_17
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 47630704 - 47630321
Alignment:
| Q |
1 |
ggtggatactgcaaattataaagatgttaattctcacttgttcgataaaatatcttcttcaaaaggattagcaagagaatttgttcagtannnnnnncaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
47630704 |
ggtggatactgcaaattataaagatgttaattctcacttgttcgataaaatatcttcctcaaaaggattagcaagagaatttgttcagtatttttttcaa |
47630605 |
T |
|
| Q |
101 |
tctggtttcgtatctaaagatgtaccaactattaaattnnnnnnn-gggtgaactttgaaatcatactaaccgtgacttgaatgtaatacatgcatgtga |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47630604 |
tctggtgtcgtatctaaagatgtaccaactattaaattaaaaaaaagggtgaactttgaaatcatactaaccgtgacttgaatgtaatacatgcatgtga |
47630505 |
T |
|
| Q |
200 |
ccttttaagtgttgaggnnnnnnncacttttcaattctaattataaataaatgaacagtaaggaagcttaacactctctaactttggacttagattgacg |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47630504 |
ccttttaagtgttgaggaaaaaaacacttttcaattctaattataaataaatgaacagtaaggaagcttaacactctctaactttggacttagattgacg |
47630405 |
T |
|
| Q |
300 |
atccttgattttcacaagcatctttaattagtaatatgaaaaacaaagaagagtgcaatggataaataaaatagggagtgggtt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
47630404 |
atccttgattttcacaagcatctttaattagtaatataaaaaacaaagaacagtgcaatagataaataaaatagggagtgggtt |
47630321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University