View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_20 (Length: 399)
Name: NF9426_low_20
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 14143549 - 14143850
Alignment:
| Q |
18 |
actacacacataaaccctagtcattagctaacaaggaaaaatcaactaccaacaaaactactcgaacaataaaagccccacaagcaacggtaatacagat |
117 |
Q |
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| T |
14143549 |
actacacacataaaccctagtcattagctaacaaggaaaaatcaactaccaacaaaactactcgaacaataaaagcaccacaagcaacgttaatacagat |
14143648 |
T |
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| Q |
118 |
catcaattctcaacagcagcatagtaaacaggatgagcacaatgacagcctacgacagtaaaaacggttaca-taggatataatttttggcatacaattt |
216 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
14143649 |
catcaattctcagcagcagcatagcaaacaggatgagcacaatgacagcctacgacagtaaaaatggttacattaggatataatttttggcatacaattt |
14143748 |
T |
|
| Q |
217 |
acattatcaaaactggaagaaaattatattagcaaccactcaaaaatgcagcttgaatttaggattattcaagttaaataagaaaaaattacagaatgta |
316 |
Q |
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||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
14143749 |
acattatcaaaactggaag-aaattatat---caaccacttaaaaatgcagcttgaacttaggattattaaagttaaataagaaaaatttacagaatgta |
14143844 |
T |
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| Q |
317 |
tagttt |
322 |
Q |
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|||||| |
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| T |
14143845 |
tagttt |
14143850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 14146141 - 14146201
Alignment:
| Q |
323 |
acaacctatactaacatgctaagaaccacatcagtaaagtttaagaaaaaccacaccctgc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14146141 |
acaacctatactaacatgctaagaaccacatcagtaaagtttaagaaaaaccacaccctgc |
14146201 |
T |
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