View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_21 (Length: 388)
Name: NF9426_low_21
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 155 - 378
Target Start/End: Complemental strand, 16835178 - 16834955
Alignment:
| Q |
155 |
cacgtgttagtatggcattcaatgattgtttcttcgtctatactttatcgtatataaaaatttattcctacaagttacgctttctgtttctatacttgag |
254 |
Q |
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| T |
16835178 |
cacgtgttagtatggtgttcaatgattgtctctgtgtcgatactttatcgtatatataaatttattcctacaagctacgctttctgtttctatacttgag |
16835079 |
T |
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| Q |
255 |
agtacttataaatacatgtgtagactaacatgtacaatgcgtgtagctgcaagatttcagccaaagttcttcaggagagacagaagtgaagttcagagtg |
354 |
Q |
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| T |
16835078 |
agtacttataaatacatgtgtagattaacatgtacaatgcgtgtagctgcaagatttcagccaaagttcttcaggagagacagaagtgcagttcagagtg |
16834979 |
T |
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| Q |
355 |
acgaaggtagcttttcggcctatg |
378 |
Q |
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| T |
16834978 |
acgaaggtagcttttcggcctatg |
16834955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 16835368 - 16835230
Alignment:
| Q |
18 |
atagaaactaggaattcagacacttctagtaaagttgcagtgatcaacatgaaggtatgtatatataattatgtagcaccgacccttcaagttgaatgcc |
117 |
Q |
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|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
16835368 |
atagaaacgaagaactcagacacttctagtaaagttgcagtgatcaacatgaaggtatgtatatataattatgtagcaccaacacttcaagttgaatgcg |
16835269 |
T |
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| Q |
118 |
tgttaaatttcaccaagacaccaacacgatattgacaca |
156 |
Q |
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| T |
16835268 |
tgttcaatctgcccaagacaccaacacgatattgacaca |
16835230 |
T |
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