View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9426_low_24 (Length: 363)

Name: NF9426_low_24
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9426_low_24
NF9426_low_24
[»] chr2 (6 HSPs)
chr2 (36-354)||(11821182-11821500)
chr2 (37-354)||(11834865-11835182)
chr2 (161-356)||(11933708-11933903)
chr2 (161-356)||(11946929-11947124)
chr2 (161-239)||(11917654-11917732)
chr2 (167-239)||(8338659-8338731)
[»] chr4 (10 HSPs)
chr4 (203-356)||(38125495-38125648)
chr4 (167-354)||(36107919-36108106)
chr4 (172-356)||(38090661-38090845)
chr4 (162-349)||(21482656-21482843)
chr4 (173-308)||(36080101-36080236)
chr4 (167-354)||(36100660-36100847)
chr4 (203-356)||(38129448-38129601)
chr4 (167-308)||(34971539-34971680)
chr4 (167-221)||(36090229-36090283)
chr4 (295-354)||(38081842-38081901)
[»] chr6 (1 HSPs)
chr6 (167-354)||(6838680-6838867)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 36 - 354
Target Start/End: Complemental strand, 11821500 - 11821182
Alignment:
Q  36 gcctattatccgttgtcggcgcaacttgttgccattgaacaacaagatcagtagcattctgttccaaagttttctcaatacgaaaaacagtaacggtttc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821500 gcctattatccgttgtcggcgcaacttgttgccattgaacaacaagatcagtagcattctgttccaaagttttctcaatacgaaaaacagtaacggtttc 11821401  T
Q  136 aggaaccgctactaatttaacagtataagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821400 aggaaccgctactaatttaacagtataagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttc 11821301  T
Q  236 ctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccac 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821300 ctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccac 11821201  T
Q  336 tgaaatgaccaccaacacc 354  Q
    |||||||||||||||||||    
T  11821200 tgaaatgaccaccaacacc 11821182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 37 - 354
Target Start/End: Original strand, 11834865 - 11835182
Alignment:
Q  37 cctattatccgttgtcggcgcaacttgttgccattgaacaacaagatcagtagcattctgttccaaagttttctcaatacgaaaaacagtaacggtttca 136  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||| |    
T  11834865 cctattatcagttgttggagcaacttgttgccattgaacaacaagatcagttgcattctgttccaatgttttctcaattcggaaaacagtaacggtttta 11834964  T
Q  137 ggaaccgctactaatttaacagtataagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcc 236  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  11834965 ggaaccgctactaatttaatggtataagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcc 11835064  T
Q  237 tattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccact 336  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  11835065 tattcaaaagccttcccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttctcaacattgcaccataccctccaccact 11835164  T
Q  337 gaaatgaccaccaacacc 354  Q
    ||  ||||||||||||||    
T  11835165 gacgtgaccaccaacacc 11835182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 356
Target Start/End: Complemental strand, 11933903 - 11933708
Alignment:
Q  161 taagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacat 260  Q
    ||||| ||||||||||| || ||||| ||||||||||||   |||||||||||||||||||| ||||||||||| ||||  |  |  ||||| |||||||    
T  11933903 taagaaagaacaacaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacat 11933804  T
Q  261 caacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaa 356  Q
    | |  ||||  ||||| |||||||||||||| || | ||||||||||| || |||  ||||||| || |||||||| ||||| || ||||||||||    
T  11933803 cgattatttgtgcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaa 11933708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 356
Target Start/End: Complemental strand, 11947124 - 11946929
Alignment:
Q  161 taagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacat 260  Q
    ||||| ||||||||||| || ||||| ||||||||||||   |||||||||||||||||||| ||||||||||| ||||  |  |  ||||| |||||||    
T  11947124 taagaaagaacaacaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacat 11947025  T
Q  261 caacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaa 356  Q
    | |  ||||  ||||| |||||||||||||| || | ||||||||||| || |||  ||||||| || |||||||| ||||| || ||||||||||    
T  11947024 cgattatttgtgcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaa 11946929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 11917732 - 11917654
Alignment:
Q  161 taagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctat 239  Q
    ||||| ||||||||||| ||  |||| ||||||||||||  ||||||||||||||||||||| ||||||||||| ||||    
T  11917732 taagaaagaacaacaccaaagttagctccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctat 11917654  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 8338731 - 8338659
Alignment:
Q  167 agaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctat 239  Q
    |||| |||||| ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||| ||||    
T  8338731 agaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttctcccattgattttctat 8338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 356
Target Start/End: Complemental strand, 38125648 - 38125495
Alignment:
Q  203 atagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccat 302  Q
    |||||||||||||| ||||||||||||||||||||||  | || |||||| ||||||||||||||||||||||||| || |||||||| ||| || |||     
T  38125648 atagcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaacaatttcagcatcaacaacattatcaatagacaacccaa 38125549  T
Q  303 attttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaa 356  Q
    |||||| || |||  ||||||||||||||||||| || ||||||||||||||||    
T  38125548 attttctcatcatgttaccataccctccaccactcaagtgaccaccaacaccaa 38125495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 36108106 - 36107919
Alignment:
Q  167 agaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaa 266  Q
    |||| |||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||  | ||   |||||||||||||||| |    
T  36108106 agaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacca 36108007  T
Q  267 tttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacacc 354  Q
    |||  ||||||||||||||||||||||| | |||| |||||| || ||   |||||||||| ||||||  ||||||||||||| ||||    
T  36108006 tttttgcatcaataatattatcaacagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccaccagcacc 36107919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 356
Target Start/End: Complemental strand, 38090845 - 38090661
Alignment:
Q  172 aacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttca 271  Q
    |||||| |||||||| ||||||||||||   ||||||||||||| |||||| |||||||||| |||||  |  |  || || | |||||||||||| | |    
T  38090845 aacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttcccccattgattccctatcaagcactcttccatcaacatcaacaatctta 38090746  T
Q  272 gcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaa 356  Q
    ||||| | |||||||||||||||||| ||| |||||| || |||  |||||||||| |||||||| ||||| |||||||||||||    
T  38090745 gcatccaaaatattatcaacagataacccaaattttctcatcatgttaccataccccccaccactaaaatgtccaccaacaccaa 38090661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 162 - 349
Target Start/End: Complemental strand, 21482843 - 21482656
Alignment:
Q  162 aagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatc 261  Q
    |||||| || ||||||  ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||  |  |   |||| || |||||    
T  21482843 aagacaaaataacaccataactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaaggatattaccattcacatc 21482744  T
Q  262 aacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccacca 349  Q
    ||||||||  || |||||||||||||||||||| | |||| |||||| || |||  | ||||| || ||||||   ||||||||||||    
T  21482743 aacaatttttgcgtcaataatattatcaacagaaagaccaaattttctcatcatatttccatatccaccaccagaaaaatgaccacca 21482656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 173 - 308
Target Start/End: Complemental strand, 36080236 - 36080101
Alignment:
Q  173 acaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcag 272  Q
    ||||| ||||| ||||||||||||||   |||||||||||| | |||||| ||||||||||| ||||  | ||  ||||| ||||||||||||||||  |    
T  36080236 acaccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaatactaccattaacatcaacaatttttg 36080137  T
Q  273 catcaataatattatcaacagataaaccatattttc 308  Q
    | ||||| |||||||||||||||| |||| ||||||    
T  36080136 cgtcaattatattatcaacagatagaccaaattttc 36080101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 36100847 - 36100660
Alignment:
Q  167 agaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaa 266  Q
    |||| |||||| ||||||||||||||||||||   |||||||||||| |||||||| |||||||| || ||||  |  |   |||| || ||||||||||    
T  36100847 agaataacaccaaaactagcaccaccaccaccccttatagcccaaaatagatcttctcccattgactttctatcaaggatattaccattgacatcaacaa 36100748  T
Q  267 tttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacacc 354  Q
    |||  |||||||| |||||||||| ||| | |||| |||||| || ||   |||||||||| ||||||  ||||||||||||| ||||    
T  36100747 tttttgcatcaatgatattatcaatagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccaccagcacc 36100660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 356
Target Start/End: Complemental strand, 38129601 - 38129448
Alignment:
Q  203 atagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccat 302  Q
    |||||||||||||||||||| ||||| | |||| | |  | ||  ||||| || ||||||| ||||| |||||||| ||||||||||| |||||| ||      
T  38129601 atagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcatcaacaatattatcaatagataacccga 38129502  T
Q  303 attttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaa 356  Q
    |||||| || |||  ||||||||||||| ||||| ||||| |||||||||||||    
T  38129501 attttctcatcatgttaccataccctcctccactcaaatggccaccaacaccaa 38129448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 308
Target Start/End: Original strand, 34971539 - 34971680
Alignment:
Q  167 agaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaa 266  Q
    |||| |||||| |||||||||||||||||||||   ||||||||||| |||||||| |||||||| || ||||  | ||   |||| || ||||||||||    
T  34971539 agaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttctcccattgactttctatcaagaatattaccattgacatcaacaa 34971638  T
Q  267 tttcagcatcaataatattatcaacagataaaccatattttc 308  Q
    |||  || ||||| |||||||||| ||| | |||| ||||||    
T  34971639 tttttgcgtcaatgatattatcaatagaaagaccaaattttc 34971680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 36090229 - 36090283
Alignment:
Q  167 agaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatctt 221  Q
    |||| |||||| |||||||| ||||||||||||  ||||||||||||||||||||    
T  36090229 agaataacaccaaaactagccccaccaccacctcttatagcccaaaaaagatctt 36090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 38081901 - 38081842
Alignment:
Q  295 taaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacacc 354  Q
    |||||||||||| |||||||  || ||||| || |||||||||||||| |||||||||||    
T  38081901 taaaccatatttacgcaacaaggttccatagccgccaccactgaaatgtccaccaacacc 38081842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 6838867 - 6838680
Alignment:
Q  167 agaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaa 266  Q
    |||| |||||| |||||||||||||||||||||  ||| ||||||||||||||||| ||||||||||| ||||  | ||   ||||||||||||||||||    
T  6838867 agaataacaccaaaactagcaccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacaa 6838768  T
Q  267 tttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacacc 354  Q
    |||  || |||||||||||||||| ||| | |||| |||||| || ||   | |||||||| ||||||  ||||||||||||| ||||    
T  6838767 tttttgcgtcaataatattatcaatagaaagaccaaattttctcatcaaatttccatacccaccaccagagaaatgaccaccagcacc 6838680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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