View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_26 (Length: 338)
Name: NF9426_low_26
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 40648682 - 40648894
Alignment:
| Q |
18 |
cttagagaggctaaaagaaattaagggtaccattaatttagtttgtttagaacaccaaaaatcttaagacttgtcttttatgtgcatgcgtgcgtgcaaa |
117 |
Q |
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| T |
40648682 |
cttagagaggctaaaagaaatcaagggtaccattaatttagtttgtttagaacaccaaaaatcttaagacttgtcttttatgtgcatgcgtgcgtgcaaa |
40648781 |
T |
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| Q |
118 |
taaatcttgtataacctattatgaacattattatacatttttatattataagagtacacaaatttgtttattttgtaacatcgttattgatgtcacgcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40648782 |
taaatcttgtataacctattatgaacattattatacatttttatattataagagtacacaaatttgtttattttgtaacatcgttattgatgtcatgcat |
40648881 |
T |
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| Q |
218 |
aaacacattacag |
230 |
Q |
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||||||||||||| |
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| T |
40648882 |
aaacacattacag |
40648894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 40648954 - 40648990
Alignment:
| Q |
290 |
tctatttcatctttatcctctcattttctctgctcct |
326 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
40648954 |
tctatttcatctttatcctctcattttctttgctcct |
40648990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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