View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_27 (Length: 309)
Name: NF9426_low_27
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 28826144 - 28826241
Alignment:
| Q |
97 |
tgtagaaatctagcagaataaagtatacttatttagcatatttggttttgaataagagggatttggtagttatgttaccatctctcatcattgacctg |
194 |
Q |
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| T |
28826144 |
tgtagaaatctagcagaataaagtatacttatttggcatatttggttttgaataagagggatttggtagttatgttaccatctctcatcattgacctg |
28826241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 293
Target Start/End: Original strand, 28826302 - 28826337
Alignment:
| Q |
258 |
ctggttcataaggtaaggatggctgagaggctactt |
293 |
Q |
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| T |
28826302 |
ctggttcataaggtaaggatggctgagaggctactt |
28826337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 3217000 - 3216903
Alignment:
| Q |
97 |
tgtagaaatctagcagaataaagtatacttatttagcatatttggttttgaataagagggatttggtagttatgttaccatctctcatcattgacctg |
194 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217000 |
tgtagaaatctagcagaataaagtatacttatttggcatatttggttttgaataaaagggatttggtagttatgttaccatctctcatcattgacctg |
3216903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 3216840 - 3216805
Alignment:
| Q |
258 |
ctggttcataaggtaaggatggctgagaggctactt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3216840 |
ctggttcataaggtaaggatggctgagaggctactt |
3216805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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