View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_28 (Length: 309)
Name: NF9426_low_28
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 49276446 - 49276739
Alignment:
| Q |
1 |
agctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaaggattttccctc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276446 |
agctctctcataaacctccctagttttttccttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaaggattttccctc |
49276545 |
T |
|
| Q |
101 |
acttcgttttcaaataccacaatcttgcatgagtaatttaatagcgtgtggtttaagtaatcaacttcagaaacggaacgtgggcatttttgtttcggag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276546 |
acttcgttttcaaataccacaatcttgcatgagtaatttaatagcgtgtggtttaagtcatcaacttcagaaacggaacgtgggcatttttgtttcggag |
49276645 |
T |
|
| Q |
201 |
tgcagattttggtctcttggagttccttagcttcgataagaatcttctcagtcgtgatttgaattggagcatcggttttgttcttctccattgt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276646 |
tgcagattttggtctcttggagttccttagcttcgataagaatcttctcagttgtgatttgaattggagcatcggttttgttcttctccattgt |
49276739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 49280003 - 49280172
Alignment:
| Q |
1 |
agctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaaggattttccctc |
100 |
Q |
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|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
49280003 |
agctctctcataaacctccctagttttttcctcatcccccacactttcttccaatcgtatatagcttaaccaggaatcatagttgaaaggattttccctc |
49280102 |
T |
|
| Q |
101 |
acttcgttttcaaataccacaatcttgcatgagtaatttaatagcgtgtggtttaagtaatcaacttcag |
170 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
49280103 |
gcttctttttcaaatgccacaatcttgcatgggtaatttaatagcgtgtggttcaagtaatcaacttcag |
49280172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 49280186 - 49280251
Alignment:
| Q |
217 |
ttggagttccttagcttcgataagaatcttctcagtcgtgatttgaattggagcatcggttttgtt |
282 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
49280186 |
ttggagttccttatcttcgataagaatcagctcagttgtgatttgaattggtgcatcggttttgtt |
49280251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2597824 - 2597927
Alignment:
| Q |
1 |
agctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaaggattttccctc |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||| ||| ||||| |||| | ||| |||||| |||||||| ||||||| || || |||||| |||| |
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| T |
2597824 |
agctctctcataaacctccatagttctttccttattcccgacactctctttccatcttatataatcaaacca-taatcataattcaacagatttttcctc |
2597922 |
T |
|
| Q |
101 |
acttc |
105 |
Q |
| |
|
||||| |
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|
| T |
2597923 |
acttc |
2597927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2292672 - 2292776
Alignment:
| Q |
1 |
agctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaaggattttccctc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||| ||||| |||||||||| |||||| |||||||| |||||||| || || ||||||| |||| |
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| T |
2292672 |
agctctctcataaacctccctagttctttccttattcccaacactctcttccaatcttatataatcaaaccatgaatcataattcaacggatttttcctc |
2292771 |
T |
|
| Q |
101 |
acttc |
105 |
Q |
| |
|
||||| |
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|
| T |
2292772 |
acttc |
2292776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34788522 - 34788428
Alignment:
| Q |
1 |
agctctctcataaacctccctagttttttacttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaaggatttt |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||| ||||| |||||||||| |||||| |||||||| ||||||| || || ||||||| |
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| T |
34788522 |
agctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacaaatcataattcaatggatttt |
34788428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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