View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_3 (Length: 543)
Name: NF9426_low_3
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 36026991 - 36027449
Alignment:
| Q |
18 |
aatattttcattatctaatgcatgcaaggaaattggtgtggtttgaatactggttctcttttcttcctgaatcaagttgcattcagaagatgcatccttt |
117 |
Q |
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| T |
36026991 |
aatattttaattatctaatgcatgcaaggaaattggtgtggtttgaatactggttctcttttcttcctgaatcaagttgcattcagaagatgcatccttt |
36027090 |
T |
|
| Q |
118 |
gctggtttagcagtgtgtaatgatttgatgctggtttatgtagccagctatatcaagccatattatcaaatatatcgagctggatctcttgtgggatctt |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027091 |
gctggtttagcagtgtgtaatgatttgatactggtttatgtagccagctatatcaagccatattatcaaatatatcgagctggatctcttgtgggatctt |
36027190 |
T |
|
| Q |
218 |
tctttttgcaatttgatacatacatctttaatattagttgatatttaagtaattgtgtacgttatatttttcacaatgattgctggtaatgtggtgtggt |
317 |
Q |
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| T |
36027191 |
tctttttgcaatttgatacatacatctttaatattagttgatatttaagtgattgtgtacgttatatttttcacaatgattgctggtaatgtggtgtggt |
36027290 |
T |
|
| Q |
318 |
gattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctactcagatgatatctcttatttatcata |
417 |
Q |
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| T |
36027291 |
gattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctacccagatgatatctcttatttatcata |
36027390 |
T |
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| Q |
418 |
tcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
476 |
Q |
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| T |
36027391 |
tcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
36027449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 284 - 472
Target Start/End: Complemental strand, 16931987 - 16931801
Alignment:
| Q |
284 |
tttttcacaatgattgctggtaatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatct |
383 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16931987 |
tttttcacaatgattgctggtaatgtggtgtgatgattttagttgtttaaagatat--ctctgcacctctcatgaccagcgatattagtgcgtccaatct |
16931890 |
T |
|
| Q |
384 |
ta-ccctactcagatgatatctcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaac |
472 |
Q |
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| T |
16931889 |
tacccctaccccgatgatttctcataattatcatatcatccctgtctaa-ttcaacgatgagtttgataaatataatattgtttgaaaac |
16931801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 16932890 - 16932767
Alignment:
| Q |
18 |
aatattttcattatctaatgcatgcaaggaaattggtgtggtttgaatactggttctcttttcttcctgaatcaagttgcattcagaagatgcatccttt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
16932890 |
aatattttcattatctaatgcatgcaaggaagttggggtggtttgagtactggttctcttttcttcctgaatcaagttgcattcagaagattcatacttt |
16932791 |
T |
|
| Q |
118 |
gctggtttagcagtgtgtaatgat |
141 |
Q |
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| T |
16932790 |
gctggtttagcagtgtgtcatgat |
16932767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 16932726 - 16932599
Alignment:
| Q |
140 |
atttgatgctggtttatgtagccagctatatcaagccatattatcaaatatatcgagctggatctcttgtgggatctttctttttgcaatttgataca-t |
238 |
Q |
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||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| | |
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| T |
16932726 |
atttgatactggtttatgtggccagctatatcaagcaatattatcaaatatatcgagttggatctcttgtggaatctttcttttcgcaatttcatacatt |
16932627 |
T |
|
| Q |
239 |
acatctttaatattagttgatatttaag |
266 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
16932626 |
acatttttaatattagttgatatttaag |
16932599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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