View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9426_low_37 (Length: 247)

Name: NF9426_low_37
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9426_low_37
NF9426_low_37
[»] chr6 (3 HSPs)
chr6 (1-240)||(18361129-18361368)
chr6 (8-69)||(25094709-25094770)
chr6 (20-53)||(31650307-31650340)
[»] chr8 (7 HSPs)
chr8 (1-240)||(3017302-3017541)
chr8 (15-69)||(16168305-16168359)
chr8 (8-50)||(26762859-26762901)
chr8 (40-78)||(34338712-34338750)
chr8 (15-52)||(10744257-10744294)
chr8 (21-70)||(39560339-39560388)
chr8 (14-74)||(26819280-26819340)
[»] chr7 (3 HSPs)
chr7 (14-71)||(5376306-5376363)
chr7 (14-74)||(35169971-35170031)
chr7 (16-48)||(46214467-46214499)
[»] chr4 (4 HSPs)
chr4 (8-56)||(18966008-18966056)
chr4 (15-69)||(1132169-1132223)
chr4 (18-63)||(35341536-35341581)
chr4 (17-65)||(37848421-37848469)
[»] chr1 (4 HSPs)
chr1 (14-66)||(14303943-14303995)
chr1 (21-69)||(32102333-32102381)
chr1 (8-53)||(15867621-15867666)
chr1 (21-53)||(40704979-40705011)
[»] chr3 (2 HSPs)
chr3 (3-70)||(38899988-38900055)
chr3 (15-69)||(44009269-44009323)
[»] chr5 (1 HSPs)
chr5 (16-78)||(7705330-7705392)
[»] chr2 (1 HSPs)
chr2 (14-50)||(35991377-35991413)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18361368 - 18361129
Alignment:
Q  1 cagtcattcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatttgttcactgtctaaattctttaagta 100  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18361368 cagtcattcatagtcgtcagatcattaaaaacgtttaactttaatcataactactttgaaagtcacacatgatttgttcactgtctaaattctttaagta 18361269  T
Q  101 tatcaaagttaacctttgtgaaactaattcttttaccatgtatgattcgaggaatagaaacatgccaatggttttccttgattgaccgagttacttcctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18361268 tatcaaagttaacctttgtgaaactaattcttttaccatgtatgattcgaggaatagaaacatgccaatggttttccttgattgaccgagttactttctt 18361169  T
Q  201 tatgtacttatttggtaccaatttctctaagttgtctctg 240  Q
    || ||||||||||||||||||||||| |||||||||||||    
T  18361168 taagtacttatttggtaccaatttctttaagttgtctctg 18361129  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 25094770 - 25094709
Alignment:
Q  8 tcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 69  Q
    ||||| |||||  ||||||||| | |||||||||||||||||| || ||| |||||||||||    
T  25094770 tcataatcgtctaatcattaaacatgtttgactttaatcataagtacttttaaagtcacaca 25094709  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 31650307 - 31650340
Alignment:
Q  20 gatcattaaaaacgtttgactttaatcataacta 53  Q
    |||||||||||| |||||||||||||||||||||    
T  31650307 gatcattaaaaatgtttgactttaatcataacta 31650340  T

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Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3017541 - 3017302
Alignment:
Q  1 cagtcattcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatttgttcactgtctaaattctttaagta 100  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||    
T  3017541 cagtcattcatagtcgtcagatcattaaaaaagtttgactttaatcataactactttgaaagtcacacatgatttgatcattgtctaaattcgttaagta 3017442  T
Q  101 tatcaaagttaacctttgtgaaactaattcttttaccatgtatgattcgaggaatagaaacatgccaatggttttccttgattgaccgagttacttcctt 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||| |||||||||||||    
T  3017441 actcaaagttaacctttgtgaaactaattcttttaccatgtatgattggagggataggaacatgccaatgattttccttgattgactgagttacttcctt 3017342  T
Q  201 tatgtacttatttggtaccaatttctctaagttgtctctg 240  Q
    || ||||||||||||||||||||||| |||||||||||||    
T  3017341 taagtacttatttggtaccaatttctttaagttgtctctg 3017302  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 16168305 - 16168359
Alignment:
Q  15 cgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 69  Q
    ||||| |||||||||||| ||||||||||||||| |||||| | ||||| |||||    
T  16168305 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacaca 16168359  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 26762859 - 26762901
Alignment:
Q  8 tcatactcgtcagatcattaaaaacgtttgactttaatcataa 50  Q
    ||||| || |||||||| |||||||||||||||||||||||||    
T  26762859 tcataatcctcagatcagtaaaaacgtttgactttaatcataa 26762901  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 34338750 - 34338712
Alignment:
Q  40 tttaatcataactaatttgaaagtcacacatgatttgtt 78  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  34338750 tttaatcataactacttttaaagtcacacatgatttgtt 34338712  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 10744257 - 10744294
Alignment:
Q  15 cgtcagatcattaaaaacgtttgactttaatcataact 52  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  10744257 cgtcacatcattaaaaacgtttgactttaattataact 10744294  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 39560388 - 39560339
Alignment:
Q  21 atcattaaaaacgtttgactttaatcataactaatttgaaagtcacacat 70  Q
    ||||||||||| ||||||||||||||||||||| ||  ||||||| ||||    
T  39560388 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 39560339  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 26819280 - 26819340
Alignment:
Q  14 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatt 74  Q
    |||| ||||||||||||| |||||||||| |||  ||||| ||  ||||||||||||||||    
T  26819280 tcgttagatcattaaaaatgtttgacttttatcgcaactacttctaaagtcacacatgatt 26819340  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 5376306 - 5376363
Alignment:
Q  14 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatg 71  Q
    ||||||||||||||||||||||||||| |||||||||||| ||  |||||| ||||||    
T  5376306 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcgcacatg 5376363  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 35169971 - 35170031
Alignment:
Q  14 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatt 74  Q
    |||| |||| |||||| | ||||||||||||||||||||| ||  ||||||||||||||||    
T  35169971 tcgttagattattaaagatgtttgactttaatcataactacttctaaagtcacacatgatt 35170031  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 46214467 - 46214499
Alignment:
Q  16 gtcagatcattaaaaacgtttgactttaatcat 48  Q
    |||||||||| ||||||||||||||||||||||    
T  46214467 gtcagatcataaaaaacgtttgactttaatcat 46214499  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 18966056 - 18966008
Alignment:
Q  8 tcatactcgtcagatcattaaaaacgtttgactttaatcataactaatt 56  Q
    ||||| |||||| ||||||||||| |||||||||||||| |||||||||    
T  18966056 tcataatcgtcatatcattaaaaatgtttgactttaatcgtaactaatt 18966008  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 1132169 - 1132223
Alignment:
Q  15 cgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 69  Q
    ||||||||||||| |||| ||||||||| |||||||||||||  |||| ||||||    
T  1132169 cgtcagatcattagaaacatttgacttttatcataactaattctaaagacacaca 1132223  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 35341536 - 35341581
Alignment:
Q  18 cagatcattaaaaacgtttgactttaatcataactaatttgaaagt 63  Q
    ||||||||||||||| ||| |||||||||||||||| ||| |||||    
T  35341536 cagatcattaaaaacatttaactttaatcataactatttttaaagt 35341581  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 37848469 - 37848421
Alignment:
Q  17 tcagatcattaaaaacgtttgactttaatcataactaatttgaaagtca 65  Q
    |||||||| ||||||| ||||||||||||| |||||| ||| |||||||    
T  37848469 tcagatcactaaaaacatttgactttaatcgtaactacttttaaagtca 37848421  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 14303943 - 14303995
Alignment:
Q  14 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcac 66  Q
    |||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||    
T  14303943 tcgtcagatcgttataaaagtttgactttaatcataactacttttaaagtcac 14303995  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 32102333 - 32102381
Alignment:
Q  21 atcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 69  Q
    ||||||||||| |||||||||||||||||| |||||| ||| |||||||    
T  32102333 atcattaaaaatgtttgactttaatcataaataattttaaaatcacaca 32102381  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 15867666 - 15867621
Alignment:
Q  8 tcatactcgtcagatcattaaaaacgtttgactttaatcataacta 53  Q
    ||||| |||||| ||||||||||  |||||||||||||||||||||    
T  15867666 tcataatcgtcatatcattaaaactgtttgactttaatcataacta 15867621  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 40705011 - 40704979
Alignment:
Q  21 atcattaaaaacgtttgactttaatcataacta 53  Q
    |||||||||||||||||| ||||||||||||||    
T  40705011 atcattaaaaacgtttgaatttaatcataacta 40704979  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 38899988 - 38900055
Alignment:
Q  3 gtcattcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacat 70  Q
    |||| |||||||| | | |||||||||||||||||||||  ||| |||||| ||| ||||||||||||    
T  38899988 gtcaatcatactcattacatcattaaaaacgtttgacttgtatcctaactacttttaaagtcacacat 38900055  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 44009323 - 44009269
Alignment:
Q  15 cgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 69  Q
    ||||| |||||||||||| ||||||||||||||| |||||| | ||||| |||||    
T  44009323 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacaca 44009269  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 7705330 - 7705392
Alignment:
Q  16 gtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatttgtt 78  Q
    ||||| |||||  |||| ||||||||| |||||||| | ||| ||||||||||||||||||||    
T  7705330 gtcaggtcattggaaacatttgacttttatcataaccacttttaaagtcacacatgatttgtt 7705392  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 35991413 - 35991377
Alignment:
Q  14 tcgtcagatcattaaaaacgtttgactttaatcataa 50  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  35991413 tcgtcagatcattaaaaacgtttgactctaataataa 35991377  T

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