View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_40 (Length: 215)
Name: NF9426_low_40
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 9876897 - 9877078
Alignment:
| Q |
15 |
cagagataagttgttttattgaagaaatttctatggtggtaatagttaaaccaactgaagaaaaccatgaagctgctcatatacccaccaagccttttct |
114 |
Q |
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| T |
9876897 |
cagagataagttgttttattgaagaactttctatggtggtaatagttaaaccaactgaagaaaaccatgaagctgctcatatacccactaagccttttct |
9876996 |
T |
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| Q |
115 |
ctctatatgttattcagttctgcatgttcttggtaggttaactttcttacttcaaatctttaattatattcaaggtttgatg |
196 |
Q |
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| T |
9876997 |
ctctatatgttattcagttctgcatgttcttggtaggttaactttcttaattcaaatctttaattatattcaaggtttgatg |
9877078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 9871251 - 9871385
Alignment:
| Q |
15 |
cagagataagttgttttattgaagaaatttctatggtggtaatagttaaaccaactgaagaaaaccatgaagctgctcatatacccaccaagccttttct |
114 |
Q |
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||||||||||||||||||||||||| |||||||| | || ||||||||||| ||| |||||| | |||||||||||| || || | |||||||| || |
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| T |
9871251 |
cagagataagttgttttattgaagagctttctatgattgtgatagttaaaccttctggagaaaatcttgaagctgctcacatccctattaagcctttcct |
9871350 |
T |
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| Q |
115 |
ctctatatgttattcagttctgcatgttcttggta |
149 |
Q |
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| T |
9871351 |
ctctatatgttatttggttctacaagttcttggta |
9871385 |
T |
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