View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9426_low_42 (Length: 208)
Name: NF9426_low_42
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 7293469 - 7293317
Alignment:
| Q |
13 |
tttggtgttcctggttctttctatgatagagtttttcctgatcgaagtctgcatttcgtccactgctcttacagtcttcactggctatcaaaggtttata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7293469 |
tttggtgttcctggttctttctatgatagagtttttcctgatcgaagtctgcatttcgtccactgctcttacagtcttcactggctatcaaaggtttata |
7293370 |
T |
|
| Q |
113 |
ttattatctgaaaaaattatattgtgtttcttgtatatttacacatgctcttg |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7293369 |
ttattatctgaaaaaattatattgtgtttcttgtatatttacacatgctcttg |
7293317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 7297943 - 7297805
Alignment:
| Q |
13 |
tttggtgttcctggttctttctatgatagagtttttcctgatcgaagtctgcatttcgtccactgctcttacagtcttcactggctatcaaaggtttata |
112 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| |||||||| | |||||| | || | |||| |||| ||||| |||||||||||||| ||| |
|
|
| T |
7297943 |
tttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattcattcctctcacagccttcagtggctatcaaaggtaaata |
7297844 |
T |
|
| Q |
113 |
ttattatctgaaaaaattatattgtgtttcttgtatattt |
152 |
Q |
| |
|
|| ||| ||| | |||||||||||||||||||||||| |
|
|
| T |
7297843 |
ttgttacctg-attttttatattgtgtttcttgtatattt |
7297805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 32709716 - 32709626
Alignment:
| Q |
19 |
gttcctggttctttctatgatagagtttttcctgatcgaagtctgcatttcgtccactgctcttacagtcttcactggctatcaaaggttt |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||| |||| ||||||| ||||| | ||||||||| ||| |||||||| ||||||| |
|
|
| T |
32709716 |
gttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagccttatgtggctatctaaggttt |
32709626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University