View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9426_low_8 (Length: 447)
Name: NF9426_low_8
Description: NF9426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9426_low_8 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 39 - 432
Target Start/End: Original strand, 5816019 - 5816422
Alignment:
| Q |
39 |
caacaccaaaatcaacacgtaatatccacataacattagagaccgagaaataggaacttgatgtcatctattcaattttagttcactaattattaccatt |
138 |
Q |
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| T |
5816019 |
caacaccaaaatcaacatgtaatatccacataacattagagatcgagaaataggaacttgatgtcatctattcaattttagttcactaattattaccatt |
5816118 |
T |
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| Q |
139 |
tagtnnnnnnntttggataaatagattcatgagtagtgtaatcacaaaagcacgtagagtggtgactgaattgataatctatttttcctaagagttttaa |
238 |
Q |
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| T |
5816119 |
tagtaaaaaaaattggataaatagattcgtgagtagtgtaatcacaaaagcgcatagagtggtgactgaattgataatctattttttctaagagttttaa |
5816218 |
T |
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| Q |
239 |
cgttctttgacatttcagggtgattggaaaaagaacctaaaataaaataaaatgtatcgtaaacccattcctgcttacgatttggaaggggaagaatgga |
338 |
Q |
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| T |
5816219 |
cgttgcttgatattttaaggtgattggaaaaagaacctaaaataaaataaaatgtatcgtaaacccattcctgcttacgatttggaaggggaagaatgga |
5816318 |
T |
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| Q |
339 |
aatataagaatgcggagagaatagtgatatcag----------ttctgattgattctaatttacttcataaccttctacgttacatgcattacattctga |
428 |
Q |
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| T |
5816319 |
aatataagaatgtggagagaatagtgatatcagttctgattgattctgattgattctaatttacttcataaccttctacgttacatgcattacattctga |
5816418 |
T |
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| Q |
429 |
aact |
432 |
Q |
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| T |
5816419 |
aact |
5816422 |
T |
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Target: scaffold0212 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 2036 - 2104
Alignment:
| Q |
151 |
ttggataaatagattcatgagtagtgtaatcacaaaagcacgtagagtggtgactgaattgataatcta |
219 |
Q |
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| T |
2036 |
ttggatagatagattcgtgagtagtgtaatcataaaagcccacggagcggtgactgaattggtaatcta |
2104 |
T |
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