View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9427_high_20 (Length: 228)

Name: NF9427_high_20
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9427_high_20
NF9427_high_20
[»] scaffold0140 (1 HSPs)
scaffold0140 (7-228)||(35902-36123)
[»] chr1 (3 HSPs)
chr1 (7-216)||(23573208-23573417)
chr1 (36-135)||(31815281-31815380)
chr1 (15-97)||(7384449-7384531)
[»] chr4 (4 HSPs)
chr4 (7-228)||(13507146-13507366)
chr4 (7-228)||(13507883-13508104)
chr4 (34-123)||(28427317-28427406)
chr4 (15-96)||(42225756-42225837)
[»] chr6 (5 HSPs)
chr6 (34-210)||(1134522-1134697)
chr6 (36-135)||(7799724-7799823)
chr6 (36-135)||(19597477-19597576)
chr6 (36-133)||(19401637-19401734)
chr6 (78-135)||(19581083-19581140)
[»] chr7 (3 HSPs)
chr7 (19-160)||(707652-707793)
chr7 (19-160)||(28557055-28557196)
chr7 (36-135)||(41385307-41385406)
[»] chr3 (3 HSPs)
chr3 (34-123)||(5386744-5386833)
chr3 (34-122)||(5386034-5386122)
chr3 (85-135)||(31200070-31200120)
[»] scaffold0129 (1 HSPs)
scaffold0129 (36-135)||(3768-3867)
[»] chr2 (3 HSPs)
chr2 (36-135)||(22059674-22059773)
chr2 (18-121)||(31559072-31559175)
chr2 (36-135)||(42827777-42827876)
[»] chr8 (1 HSPs)
chr8 (65-160)||(36900336-36900431)


Alignment Details
Target: scaffold0140 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 35902 - 36123
Alignment:
Q  7 ccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35902 ccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagata 36001  T
Q  107 ctggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36002 ctggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttggcacactttaatgtaattaaaagatgtgtatggttga 36101  T
Q  207 ttttgtttttaggatcctaata 228  Q
    ||||||||||||| ||||||||    
T  36102 ttttgtttttagggtcctaata 36123  T

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Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 23573208 - 23573417
Alignment:
Q  7 ccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagata 106  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  23573208 ccatgaccaattcatcttcaactgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaactgagaatcctaaaaggagata 23573307  T
Q  107 ctggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||   ||| ||||| |||||| |    
T  23573308 ctggaaatgcccaacatttatggtgagttattttgtataatactttgattgttgggtaatttcgcaccctttaatgtaaaataaaaatgtggatggttta 23573407  T
Q  207 ttttgttttt 216  Q
    ||||||||||    
T  23573408 ttttgttttt 23573417  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 31815380 - 31815281
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||| ||||||    
T  31815380 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatgatgagtt 31815281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 7384531 - 7384449
Alignment:
Q  15 aattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaa 97  Q
    |||||||||||||||||  ||||||| ||||  ||||||||||  |||| |||||| ||||| ||||||| | | ||||||||    
T  7384531 aattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctccaattcaaataaaaaccctaa 7384449  T

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Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 13507146 - 13507366
Alignment:
Q  7 ccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagata 106  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||||||| |||| | |||||||||||||||| |||||    
T  13507146 ccattactaattcatcttcaattgag-tgcctatttgtggttgcaacaaagcaatgaatatgtttatctccaatttagttgacaaccctaaaagaagata 13507244  T
Q  107 ctggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttga 206  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||    
T  13507245 ctggaaatacccaacatttatggcgagttattttgtataatactttgtttgttgtgtattttcgcacagtttaatgtaattaaaaaatgtatatggttga 13507344  T
Q  207 ttttgtttttaggatcctaata 228  Q
    ||||||| ||||| | ||||||    
T  13507345 ttttgttattagggtgctaata 13507366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 13508104 - 13507883
Alignment:
Q  7 ccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagata 106  Q
    ||||||| ||||||| ||||||| |  ||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||    
T  13508104 ccattactaattcatattcaattaagttgcctatatgtggttgcaacaaagcaatgaagatgtttatccccaattcaattgacaaccctaaaatgagata 13508005  T
Q  107 ctggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttga 206  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||||||    
T  13508004 atggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgtgtattttcgcacagtttaatataattaaaatatatatatggttga 13507905  T
Q  207 ttttgtttttaggatcctaata 228  Q
    ||||||||||||| | ||||||    
T  13507904 ttttgtttttagggtgctaata 13507883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 28427317 - 28427406
Alignment:
Q  34 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat 123  Q
    ||||| |||||||||||||||||||   || |||||| || || ||||||||||| |||||||||| |||||| ||||||||||||||||    
T  28427317 tgcctttttgtggttgcaacaaaaccgcgaggatgttcatatccaattcaattgaaaaccctaaaaagagatattggaaatgcccaacat 28427406  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 42225756 - 42225837
Alignment:
Q  15 aattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacccta 96  Q
    |||| |||||||||| || ||| ||| ||||||||||||||||  |||| |||||| ||||| ||||||| ||| |||||||    
T  42225756 aattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctccaattcaaatgaaaacccta 42225837  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 1134522 - 1134697
Alignment:
Q  34 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgag 133  Q
    ||||||| ||||||||||| ||||  |||| |||||| ||||| ||||||  |||||||| ||||| |||||| |||||||||||||| ||||||||||     
T  1134522 tgcctatatgtggttgcaaaaaaattatgaggatgttcatctccaattcacatgacaacc-taaaaagagatattggaaatgcccaacctttatggtgaa 1134620  T
Q  134 ttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgatttt 210  Q
    |   ||  ||||||| ||||||| |||  ||||||| |||| |||||||||||||| || ||  |||| ||||||||    
T  1134621 tgtgttgttataatagtttgttttttgtttattttcccacattttaatgtaattaatagttgcatatgattgatttt 1134697  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 7799823 - 7799724
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||| ||||||||||||||||  ||||| ||||| || || ||||||| ||  |||||||||||||||||||||||||||||||| | |||||||||||    
T  7799823 cctatgtgtggttgcaacaaaatcatgaaaatgttcatatccaattcaagtgcaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 7799724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 19597576 - 19597477
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||| ||||||||||||||||  ||||  ||||| || || |||||| |||||||||||||||||||||| || |||| |||||| | |||||||||||    
T  19597576 cctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcagttgacaaccctaaaaggagatattgaaaatacccaacctatatggtgagtt 19597477  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 19401734 - 19401637
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgag 133  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||| ||| | |||||||||    
T  19401734 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacgtgaaaaccctaaaaggagatactggaaatgccaaacttatatggtgag 19401637  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 19581140 - 19581083
Alignment:
Q  78 aattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| | |||||| ||||    
T  19581140 aattcaattgacaactctaaaaggagatattggaaatacccaacctgtatggttagtt 19581083  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 707793 - 707652
Alignment:
Q  19 catcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgccc 118  Q
    |||| ||||||||| ||||||| ||||| ||||||||||  || | |||||| ||||| |||| || ||| ||||||||||||||||| |||||||| ||    
T  707793 catcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccctaaaaggagatattggaaatgtcc 707694  T
Q  119 aacatttatggtgagttattttgtataatactttgtttgttg 160  Q
    ||| |||| |||| |||  ||  ||||||||| |||||||||    
T  707693 aacctttacggtgtgttcgttgttataatactatgtttgttg 707652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 28557196 - 28557055
Alignment:
Q  19 catcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgccc 118  Q
    |||| ||||||||| ||||||| ||||| ||||||||||  || | |||||| ||||| |||| || ||| || |||||||||||||| |||||||| ||    
T  28557196 catcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaatcctaaaaggagatattggaaatgtcc 28557097  T
Q  119 aacatttatggtgagttattttgtataatactttgtttgttg 160  Q
    ||| |||| ||||||||  ||  ||||||||| || ||||||    
T  28557096 aacctttacggtgagttcgttgttataatactatgattgttg 28557055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 41385406 - 41385307
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||| ||||||||||||||||  ||||  ||||| || || |||||| |||||||||||||||||||||| ||||||| |||||| | ||| |||||||    
T  41385406 cctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacccaacctatattgtgagtt 41385307  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 5386833 - 5386744
Alignment:
Q  34 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat 123  Q
    ||||||||||  ||||||||||||| |||| |||||| || || ||||||||||| |||||||||||||| || ||||||||||||||||    
T  5386833 tgcctatttgctgttgcaacaaaaccatgaggatgttaatatccaattcaattgaaaaccctaaaaggaggtattggaaatgcccaacat 5386744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 5386034 - 5386122
Alignment:
Q  34 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaaca 122  Q
    ||||||||||||||| |||  |||| |||| |||||| || |  ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  5386034 tgcctatttgtggtttcaattaaaccatgaggatgttcatatgcaattcaattgaaaactctaaaaggagatattggaaatgcccaaca 5386122  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 31200070 - 31200120
Alignment:
Q  85 ttgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    |||||||||||||||||||||| ||||||| |||||| | |||||||||||    
T  31200070 ttgacaaccctaaaaggagatattggaaatacccaacctatatggtgagtt 31200120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 3867 - 3768
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  3867 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 3768  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 22059773 - 22059674
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  22059773 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 22059674  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 31559175 - 31559072
Alignment:
Q  18 tcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcc 117  Q
    ||||| ||||||||  ||||||| |||||||||||||||| ||||| |||||| ||||| |||| |  | |||||||||||| |||||| ||||||||||    
T  31559175 tcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctccaatttatattacaaccctaaaacgagatattggaaatgcc 31559076  T
Q  118 caac 121  Q
    ||||    
T  31559075 caac 31559072  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 42827777 - 42827876
Alignment:
Q  36 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 135  Q
    ||||| || |||||||||||||  ||||  ||||| || || |||||| |||||||||||||||||||||| ||||||| | |||| | |||||||||||    
T  42827777 cctatgtgcggttgcaacaaaattatgagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacacaacctatatggtgagtt 42827876  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 36900336 - 36900431
Alignment:
Q  65 gatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg 160  Q
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T  36900336 gatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaacctttacggtgagttcgttgttataatactatgtttgttg 36900431  T

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