View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_high_3 (Length: 470)
Name: NF9427_high_3
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 1113888 - 1114330
Alignment:
| Q |
19 |
taacattcattcacaatctccaaattctgagaccatgcggtaacccattcattgttatgtgatagaaatttcaatgttgaatcattttgaagaagtttga |
118 |
Q |
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| T |
1113888 |
taacattcattcacaatctccaaattctgagaccatgcggtaacccattcattgttatgtgatagaaatttcaatgttgaatcattttgaagaagtttga |
1113987 |
T |
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| Q |
119 |
actgtgaacattctgtggaattgtgcacacaatcccc-caaacaaactgaaactcagtaagtaaatcattcattcatcagtatttcattaccaatgtatc |
217 |
Q |
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| T |
1113988 |
actgtgaacattctgtggaattgtgcacacaatccccccaaacaaactgaaactcagtaagtaaatcattcattcatcattatttcattaccaatgtatc |
1114087 |
T |
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| Q |
218 |
attttctcattgctagattcactcatactcatagaacccttcacagacacaatactttttctcttttctctgttgtttgcaacacagatcaacataaagg |
317 |
Q |
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| T |
1114088 |
attttctcattgctagattcactcatactcatagaacccttcacagacacaatactttttctcttttctctgttgtttgcaacacagatcaacataaagg |
1114187 |
T |
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| Q |
318 |
tggcacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaaccctaatggc |
417 |
Q |
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| T |
1114188 |
tgacacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaaccctaatggc |
1114287 |
T |
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| Q |
418 |
ccaaatgctgttattcaacttttcagaagctatggtttctctg |
460 |
Q |
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| T |
1114288 |
ccaaatgctgttattcaacttttcagaagctatggtttctctg |
1114330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 460
Target Start/End: Complemental strand, 17377622 - 17377472
Alignment:
| Q |
310 |
cataaaggtggcacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaacc |
409 |
Q |
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|||||||||| |||||||||| ||| || || | || ||||||| |||||||||||||| |||||||||||| | || |||||| ||| || ||||| |
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| T |
17377622 |
cataaaggtgacacctttacagtgtcaaaccttgttaattcatgtgagttgtcccctgaaacagcccttaaactcttaaacaggttgaaacccaaaaacc |
17377523 |
T |
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| Q |
410 |
ctaatggcccaaatgctgttattcaacttttcagaagctatggtttctctg |
460 |
Q |
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| T |
17377522 |
ctaatgccccaaatgctgttattcaacttctaaggaactatggtttttctg |
17377472 |
T |
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