View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_1 (Length: 756)
Name: NF9427_low_1
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 19 - 748
Target Start/End: Complemental strand, 43985850 - 43985121
Alignment:
| Q |
19 |
agaataaagcagcttacgagattcgtttgttaacaaggtcaagcattttcaacagagcttgtttgattgaagttggaactgtgccaccactgttggatct |
118 |
Q |
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| T |
43985850 |
agaataaagcagcttacgagattcgtttgttaacaaggtcaagcattttcaacagagcttgtttgattgaagttggaactgtgccaccactgttggatct |
43985751 |
T |
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| Q |
119 |
tttagctacggaggataaaaccactcaggagaatgcaatctctgctttactgaagctttcaaagtatgcaaccgggcctgaaaatataatagaccataac |
218 |
Q |
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| T |
43985750 |
tttagctacggaggataaaaccactcaggagaatgcaatctctgctttactgaagctttcaaagtatgcaaccgggcctgaaaatataatagaccataac |
43985651 |
T |
|
| Q |
219 |
ggtttaaatcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccgtcaaattgcagctgctataatattctatctttgttcagtgaaagaat |
318 |
Q |
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| T |
43985650 |
ggtttaaagcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccgtcaaattgcagcagctataatattctatctttgttcagtgaaagaat |
43985551 |
T |
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| Q |
319 |
atagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaacctgcgggaaaaagaatgcagtggttgccat |
418 |
Q |
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| T |
43985550 |
atagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaacctgcggaaaaaagaatgcagtggttgcgat |
43985451 |
T |
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| Q |
419 |
ttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgtttctattttgaataccttgtgcaacaaggaa |
518 |
Q |
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| T |
43985450 |
ttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgtttctattttgaataccttgtgcaacaaggaa |
43985351 |
T |
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| Q |
519 |
gagcttgttactgaaactttggctgttcttgcggcacttgctgagaattttgatggagctaatgctgttttggaagcttctgcattgccgttgattgctg |
618 |
Q |
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| T |
43985350 |
gagcttgttactgaaactctggctgttcttgcggcacttgctgagaattttgatggagctaatgctgttttggaagcttctgcattgccgttgattactg |
43985251 |
T |
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| Q |
619 |
ggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtgttaatggtggtgtggatgttgctggtgttct |
718 |
Q |
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| T |
43985250 |
ggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtgttaatggtggtgttgatgttgctggtgttct |
43985151 |
T |
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| Q |
719 |
tgctaaggatgttacacttatgcctttgct |
748 |
Q |
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| T |
43985150 |
tgctaaggatgttacacttatgcctttgct |
43985121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 35205912 - 35205835
Alignment:
| Q |
264 |
gaagcccgtcaaattgcagctgctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaat |
341 |
Q |
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|||||||||| | ||||||||| ||||||||| || || |||||||||||| || |||||||||||||| |||||| |
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| T |
35205912 |
gaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaaaattaataggcgaaaat |
35205835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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