View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_13 (Length: 439)
Name: NF9427_low_13
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 32194817 - 32195053
Alignment:
| Q |
15 |
aacctgtgagcagttctccgaaaaaccctctcaaggctctttgttcctcctcttacagagactccacaacaccgtgcaaaacatttccagcaagttccga |
114 |
Q |
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| T |
32194817 |
aacctgtgagcagttctccgaaaaaccctctcaaggctctttgttcctcctcttacagagactccacaacaccgtgcaaaacatttccagcaagttccga |
32194916 |
T |
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| Q |
115 |
tctaaccgcctgcaaattctgaaaaatacgacagaaaaacagtctgcagttgacaaactcacgcaaaacatccaaaatacccaatcgcttgcagcactgc |
214 |
Q |
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| T |
32194917 |
tctaaccgcctgcaaattctgaaaaatacgacagaaaaacagtctgcagttgacaaactcacgcaaaacatccaaaatacccaatcgcttgcagcactgc |
32195016 |
T |
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| Q |
215 |
acactgcaatgataacccagaaataaatgccagttac |
251 |
Q |
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| T |
32195017 |
acactgcaatgataacccagaaataaatgccagttac |
32195053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 32195050 - 32195177
Alignment:
| Q |
294 |
ttacacacctttattttgctgatttataggcatagctaaacaatttcttgacaaccaaatactcaaccaatcgccagggacatttagatcttctctatta |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32195050 |
ttacacacctttattttgctgatttataggcatagctaaacaatttcttgacaaccaaatactcaaccaatcgccagggacatttagatcttctctatta |
32195149 |
T |
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| Q |
394 |
attaatatctccatatacaccccgtagg |
421 |
Q |
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| T |
32195150 |
attaatatctccatatacaccccgtagg |
32195177 |
T |
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