View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_2 (Length: 657)
Name: NF9427_low_2
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_2 |
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| [»] scaffold0028 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Original strand, 23179908 - 23180544
Alignment:
| Q |
18 |
ccaagatgtaaacattgattcagtgacacttggcttcaacaggacatcatcaatatgctcataatcgttaaagtaaaccggttgttcgcctggaatatga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179908 |
ccaagatgtaaacattgattcagtgacacttggcttcaacaggacatcatcaatatgctcataatcgttaaagtaaaccggttgttcgcctggaatatga |
23180007 |
T |
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| Q |
118 |
aagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaagtatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180008 |
aagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaagtatt |
23180107 |
T |
|
| Q |
218 |
gtttgatctcatcaatgttaccactttgagttgaatctctgtcttgtgttggatcaacaacggctgttatcctaccataacctttatttatgtgcttgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180108 |
gtttgatctcatcaatgttaccactttgagttgaatctctgtcttgtgttggatcaacaacggctgttatcctaccataacctttatttatgtgcttgaa |
23180207 |
T |
|
| Q |
318 |
taagtacttaatcgatgcacttttgctacaccattccacattgatatgtgcttggtacttcattagcaacgtagggttatatggtacaatatgtttgtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180208 |
taagtacttaatcgatgcacttttgctacaccattccacattgatatgtgcttggtacttcattagcaacgtagggttatatggtacaatatgtttgtta |
23180307 |
T |
|
| Q |
418 |
ttgagtgaaacaccattcttgacaattgtgttaccattgtctcttcgtctatacactggataaccttctttgtcaacaattgttgagttctgatacgtct |
517 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23180308 |
ttgagtgaaacaccgttcttgacaattgtgttaccattgtctcttcgtctgtacaccggataaccttctttgtcaacaattgttgagttctgatacttct |
23180407 |
T |
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| Q |
518 |
tagggtagtattttgtgcattttccatctttcatgcaaggtgat---------gataaaccacatggaccatggatcatatgatttttaaccaaattata |
608 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180408 |
tagggtagtactttgtgcattttccatctttcatgcaaggtgatgatttatgagataaaccacatggaccatggatcatatgatttttaaccaaattata |
23180507 |
T |
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| Q |
609 |
caactctttctcatgttcctgattgggtatctctgct |
645 |
Q |
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| T |
23180508 |
caactctttctcatgttcctgattgggtatctctgct |
23180544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 116392 - 116511
Alignment:
| Q |
114 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
213 |
Q |
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||||||||||| | ||| || |||||||| | |||||| |||||||| || || |||||||||| |||||||| ||| || | |||||||||||| || |
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| T |
116392 |
atgaaagaacatacgttcgaccgctggctttctaccatgaattggaaaagagaacattctccaacttgcttcacttggagaaatatacctacaatctaaa |
116491 |
T |
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| Q |
214 |
tattgtttgatctcatcaat |
233 |
Q |
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||||| |||||||||||||| |
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| T |
116492 |
tattgcttgatctcatcaat |
116511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 116562 - 116646
Alignment:
| Q |
293 |
cataacctttatttatgtgcttgaataagtacttaatcgatgcacttttgctacaccattccacattgatatgtgcttggtactt |
377 |
Q |
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|||||||||||| || | |||||||||||| || || |||| || || | ||||||| |||| ||||||||| ||||||||||| |
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| T |
116562 |
cataacctttatggatatacttgaataagtatttgattgatgtacgttggttacaccactccatattgatatgagcttggtactt |
116646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 151506 - 151624
Alignment:
| Q |
112 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
211 |
Q |
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||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
151506 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
151605 |
T |
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| Q |
212 |
agtattgtttgatctcatc |
230 |
Q |
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| T |
151606 |
ggtattgtttgatttcatc |
151624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 18060486 - 18060604
Alignment:
| Q |
112 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
211 |
Q |
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||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
18060486 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
18060585 |
T |
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| Q |
212 |
agtattgtttgatctcatc |
230 |
Q |
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|||||||||||| ||||| |
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| T |
18060586 |
ggtattgtttgatttcatc |
18060604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 22065434 - 22065490
Alignment:
| Q |
147 |
accatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacct |
203 |
Q |
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|||||| |||||||||||||| |||||||||| |||||||| ||| || |||||||| |
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| T |
22065434 |
accatgaattggaaatgaaaacattctccaacttgcttcacttggagaaacatacct |
22065490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 22072342 - 22072406
Alignment:
| Q |
168 |
aattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaa |
232 |
Q |
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||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| || ||||||| |
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| T |
22072342 |
aattctccaacatgcctcacttggtgatatatacctacaatccaagtattgttttatttcatcaa |
22072406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 124877 - 124995
Alignment:
| Q |
114 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
213 |
Q |
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||||||||||| | ||||| ||||| || ||||||||||| | || ||||| |||||||||||||| |||| |||||| ||||| ||||||| || | |
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| T |
124877 |
atgaaagaacatgcgctcaacagctggtttacgaccatgtatggagaaagaaaatattctccaacatgcctcacttggtgaaacatatctacaataaatg |
124976 |
T |
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| Q |
214 |
tattgtttgatctcatcaa |
232 |
Q |
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|| |||||||| ||||||| |
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| T |
124977 |
tactgtttgatttcatcaa |
124995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 22320335 - 22320258
Alignment:
| Q |
18 |
ccaagatgtaaacattgattcagtgacacttggcttcaacaggacatcatcaatatgctcataatcgttaaagtaaac |
95 |
Q |
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|||||| ||||||||||||||||| ||||||||||| | || |||||| |||| ||||||| ||| ||| ||||||| |
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| T |
22320335 |
ccaagaggtaaacattgattcagttacacttggcttaaggagaacatcaccaatttgctcatgatctttatagtaaac |
22320258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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