View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_20 (Length: 352)
Name: NF9427_low_20
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 6274499 - 6274807
Alignment:
| Q |
1 |
caacaatcatcctattgtgaaagagaatctccctccaaaagatggactcctcggctttttcaaatctcgatatgcagcgattagtgctgcttcgaaatag |
100 |
Q |
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| T |
6274499 |
caacaatcatcctattgtgaaagagaatctccctccaaaagatggactcctcggctttttcaaatctcgatatgcagcgattagtgctgcttcgaaatag |
6274598 |
T |
|
| Q |
101 |
accgatttcaagagtgatgccacatgctgcagagctgttggattaagagagataaataggttagtctttagactaatcccagaaataaagcaaagttcac |
200 |
Q |
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| T |
6274599 |
actgatttcaggagtgatgccgcatgctcgagagccgttggattaagagagataaataggttggtctttagactaatcccagaaataaagaaaatttcac |
6274698 |
T |
|
| Q |
201 |
tcgttttagtttatttgagcagtattttgagtgttattatcacttatgatgagtacaaatttgatatttatatttagtttaagtatcctatttaatatgt |
300 |
Q |
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|| ||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||| |||| |||||| | ||||| |
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| T |
6274699 |
tcattttagtttatttgagctgtattttgagttttattgtcactt---atgagtacaaatttgatatttataattagttcaagtctcctatatgatatgg |
6274795 |
T |
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| Q |
301 |
agtgcaatctta |
312 |
Q |
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| T |
6274796 |
agtgctatctta |
6274807 |
T |
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