View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_22 (Length: 350)
Name: NF9427_low_22
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 335
Target Start/End: Original strand, 43907105 - 43907434
Alignment:
| Q |
6 |
gtttggtggtggagtcctctaatgttcactttgtaacaaccacaaacaaaatgccatgtcctaaagaacaagctcttcttaaactcttcaacaatgtctc |
105 |
Q |
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| T |
43907105 |
gtttagtggtggagtcctctaatgttcactttgtaacaaccacaaacaaaatgccatgtcctaaagaacaagctcttcttaaactcttcaacaatgtctc |
43907204 |
T |
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| Q |
106 |
aacttctttgcagcttcttttcttagtcctattttccattgccatttttcttgtcacattcttaaccttcactggtagattccccttaatccaaaggtct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43907205 |
aacttctttgcagcttcttttcttagtcctattttccattgccatttttcttgtcacattcttaaccttcactggtagattccccttaatccaaaggtct |
43907304 |
T |
|
| Q |
206 |
tgctaatgctcttctttttctatctacacctcccattcaactagcacattcatttttcccataacatgtatttaaattacaacattctatttgtatctat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43907305 |
tgctaatgctcttctttttctatctacacctcccattcaactagcacattcatttttcccataacatgtatttaaattacaacattctatttgtatctat |
43907404 |
T |
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| Q |
306 |
tgcagagatcaacagtatgaatatgtgtat |
335 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43907405 |
tgcagagatcaacagtatgaatatgtgtat |
43907434 |
T |
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