View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9427_low_34 (Length: 270)

Name: NF9427_low_34
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9427_low_34
NF9427_low_34
[»] chr6 (10 HSPs)
chr6 (11-247)||(7124071-7124307)
chr6 (11-247)||(7115595-7115831)
chr6 (11-247)||(7120667-7120903)
chr6 (103-183)||(7140931-7141011)
chr6 (11-84)||(8656700-8656773)
chr6 (102-183)||(8680544-8680624)
chr6 (18-73)||(7140792-7140847)
chr6 (18-73)||(8680406-8680461)
chr6 (27-73)||(7175499-7175545)
chr6 (113-183)||(8656823-8656893)
[»] scaffold0896 (2 HSPs)
scaffold0896 (49-247)||(2057-2255)
scaffold0896 (113-183)||(1317-1387)
[»] chr7 (4 HSPs)
chr7 (10-64)||(32413600-32413654)
chr7 (11-64)||(45498220-45498273)
chr7 (20-64)||(6844105-6844149)
chr7 (13-64)||(6889122-6889173)
[»] chr5 (1 HSPs)
chr5 (11-67)||(7022041-7022097)
[»] chr1 (1 HSPs)
chr1 (11-64)||(14288945-14288998)
[»] chr3 (2 HSPs)
chr3 (11-58)||(7177932-7177979)
chr3 (9-64)||(13491908-13491963)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 7124071 - 7124307
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtcggcattatcatcaccgttatattgttttcggatatct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7124071 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtcggcattatcatcaccgttatattgttttcggatatct 7124170  T
Q  111 tgcagtagaagaaacacccagtaatgccagaatgctacctcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtatt 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7124171 tgcagtagaagaaacacccaataatgccagaatgctacctcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtatt 7124270  T
Q  211 gaaaactaaaagcaaaatgagaaaggaaaaatcctat 247  Q
    ||| ||||||||||||||||||||||||||| |||||    
T  7124271 gaatactaaaagcaaaatgagaaaggaaaaaccctat 7124307  T

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Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 7115595 - 7115831
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtcggcattatcatcaccgttatattgttttcggatatct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||    
T  7115595 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtcggcgttatcatcaccgttatattgttttcgaatttct 7115694  T
Q  111 tgcagtagaagaaacacccagtaatgccagaatgctacctcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtatt 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7115695 tgcagtagaagaaacacccagtaatgccagaatgctaccgcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtatt 7115794  T
Q  211 gaaaactaaaagcaaaatgagaaaggaaaaatcctat 247  Q
    ||||||||||||||||||||||||||||||| |||||    
T  7115795 gaaaactaaaagcaaaatgagaaaggaaaaaccctat 7115831  T

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Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 7120667 - 7120903
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtcggcattatcatcaccgttatattgttttcggatatct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||    
T  7120667 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtcggcgttatcatcaccgttatattgttttcgaatttct 7120766  T
Q  111 tgcagtagaagaaacacccagtaatgccagaatgctacctcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtatt 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7120767 tgcagtagaagaaacacccagtaatgccagaatgctaccgcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtatt 7120866  T
Q  211 gaaaactaaaagcaaaatgagaaaggaaaaatcctat 247  Q
    ||||||||||||||||||||||||||||||| |||||    
T  7120867 gaaaactaaaagcaaaatgagaaaggaaaaaccctat 7120903  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 7140931 - 7141011
Alignment:
Q  103 ggatatcttgcagtagaagaaacacccagtaatgccagaatgctacctcggccatcaacatgagattcatattgatttgag 183  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  7140931 ggatttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataagattcatattgatttgag 7141011  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 8656700 - 8656773
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtcggcattatcat 84  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||    
T  8656700 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcggggaaatcacttaatttgtcgttattatcat 8656773  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 8680544 - 8680624
Alignment:
Q  102 cggatatcttgcagtagaagaaacacccagtaatgccagaatgctacctcggccatcaacatgagattcatattgatttgag 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| | |||||| ||||||||||    
T  8680544 cggatttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataaaattcat-ttgatttgag 8680624  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 7140792 - 7140847
Alignment:
Q  18 ttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtc 73  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  7140792 ttcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaacttgtc 7140847  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 8680406 - 8680461
Alignment:
Q  18 ttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtc 73  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||| |||||    
T  8680406 ttcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaacttgtc 8680461  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 7175499 - 7175545
Alignment:
Q  27 gagagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtc 73  Q
    |||||||||||||||||||||||||| ||||| ||||| ||| ||||    
T  7175499 gagagtatgtgaagtaaaacacaatcgggtaactcactcaatctgtc 7175545  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 8656823 - 8656893
Alignment:
Q  113 cagtagaagaaacacccagtaatgccagaatgctacctcggccatcaacatgagattcatattgatttgag 183  Q
    |||||||| ||||| ||||||||||||| ||| ||||||  || |  ||| ||||||||||||||||||||    
T  8656823 cagtagaaaaaacaaccagtaatgccagcatgttacctcaaccgtggacaagagattcatattgatttgag 8656893  T

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Target: scaffold0896 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 2255 - 2057
Alignment:
Q  49 aatcaggtaaatcacttaatttgtcggcattatcatcaccgttatattgttttcggatatcttgcagtagaagaaacacccagtaatgccagaatgctac 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2255 aatcaggtaaatcacttaatttgtcggcattatcatcaccgttatattgttttcggatatcttgcagtagaagaaacacccaataatgccagaatgctac 2156  T
Q  149 ctcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtattgaaaactaaaagcaaaatgagaaaggaaaaatcctat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  2155 ctcggccatcaacatgagattcatattgatttgagatccaccctttgatggcggcaagtattgaatactaaaagcaaaatgagaaaggaaaaaccctat 2057  T

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Target: scaffold0896; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 1387 - 1317
Alignment:
Q  113 cagtagaagaaacacccagtaatgccagaatgctacctcggccatcaacatgagattcatattgatttgag 183  Q
    |||||||| ||||| ||||||||||||| ||| ||||||  || |  ||| ||||||||||||||||||||    
T  1387 cagtagaaaaaacaaccagtaatgccagcatgttacctcaaccgtggacaagagattcatattgatttgag 1317  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 32413654 - 32413600
Alignment:
Q  10 gtttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 64  Q
    |||||||||||||| | |||||||||||||||||||||||||||| |||||||||    
T  32413654 gtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcact 32413600  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 45498220 - 45498273
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 64  Q
    |||||| ||||||||||| |  |||||||||||||| |||||||||||||||||    
T  45498220 tttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcact 45498273  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 6844149 - 6844105
Alignment:
Q  20 caaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 64  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||    
T  6844149 caaaaaagagagtatgtgaagaataacacaatcgggtaaatcact 6844105  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 6889173 - 6889122
Alignment:
Q  13 tggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 64  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||| |||||    
T  6889173 tggtgtccaaaaaagagagtatgtgaagaataacacaatcgggtaagtcact 6889122  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 7022097 - 7022041
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcacttaa 67  Q
    |||||||| |||||| |||||||||||||||| || ||||| |||||||||||||||    
T  7022097 tttggtgtccaaaaaggagagtatgtgaagtacaagacaattaggtaaatcacttaa 7022041  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 14288945 - 14288998
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 64  Q
    |||||| ||||||||||| |  |||||||||||||| |||||||||||||||||    
T  14288945 tttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcact 14288998  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 7177979 - 7177932
Alignment:
Q  11 tttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa 58  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| |||||    
T  7177979 tttggtgttcaaaaaggagtgtatgtgaagtagaacacaatccggtaa 7177932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 13491963 - 13491908
Alignment:
Q  9 agtttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcact 64  Q
    |||||||||| ||||||||| || |||||||||||||| |||||||| || |||||    
T  13491963 agtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcaggcaactcact 13491908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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