View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_36 (Length: 265)
Name: NF9427_low_36
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 30552485 - 30552728
Alignment:
| Q |
1 |
ttagttacaagtgacaagtttaa-----aaaatgtcataccgtgtgcgctaaggaatatgaaaaatatggaaaaaagccagatccaaaacctgcaagagt |
95 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30552485 |
ttagttacaagtgacaagtttaatatgtaaaatgacataccgtgtgcgctaaggaatatgaaaaatatggaaaaaagccagatccaaaacctgcaagagt |
30552584 |
T |
|
| Q |
96 |
atcaaaagattagttaatcaagattgtttagtcttgtataatatacttttgaaattactaaagaatctattttgtaaatatttatgtagctcagttatat |
195 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30552585 |
atcaaaagattagttaatcaagatagttt-----tgtataatatacttttgaaattactaaagaatctattttgtaaatatttatgtagctcagttatat |
30552679 |
T |
|
| Q |
196 |
tttctgcttgtgtccatattataattataaaccttgtgtacaaatatat |
244 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
30552680 |
tttctgcttgtgtccatattataattagaaaccttgcgtacaaatatat |
30552728 |
T |
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