View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_40 (Length: 252)
Name: NF9427_low_40
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_40 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 27256799 - 27257041
Alignment:
| Q |
10 |
agcagagacatatggcaggagcacgcattttcaagctgcattccgaggaagatgttcattcgattgattatattcatacattccttccttcactttttga |
109 |
Q |
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| T |
27256799 |
agcagagacatgtggcaagagcacgcattttcaagctgcattccgaggaagatgttcattcgattgattatattcatacattccttccttcactttttga |
27256898 |
T |
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| Q |
110 |
aagattcttttgatatttcattttgcataataacttctttgagaagtttatccaaaatagaaagagaagtttatcttgtgtattattgtctctagactgn |
209 |
Q |
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| T |
27256899 |
aagattcttttgatatttcattttgcataataacttctttgagaagtttatccaaaatagaaagagaagtttatcttgtgtattattgtctctagactga |
27256998 |
T |
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| Q |
210 |
nnnnnnntacaaatagaaaaagaagtttatcttgtgtattaat |
252 |
Q |
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| T |
27256999 |
aaaaaaatacaaatagaaaaagaagtttatcttgtgtattaat |
27257041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 27258241 - 27258343
Alignment:
| Q |
64 |
ttcattcgattgattatattcatacattccttccttcactttttgaaagattcttttgatatttcattttgcataataacttctttgagaagtttatcca |
163 |
Q |
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| T |
27258241 |
ttcattcgattgattatattcatacattccttccatcgctttttgaaaaattcttttgatatttcattttgcataataacttctttaagaagtttatcca |
27258340 |
T |
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| Q |
164 |
aaa |
166 |
Q |
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| T |
27258341 |
aaa |
27258343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 27235075 - 27235120
Alignment:
| Q |
114 |
ttcttttgatatttcattttgcataataacttctttgagaagttta |
159 |
Q |
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| T |
27235075 |
ttcttttgatatttctttttgcaaaagaacttctctgagaagttta |
27235120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 33310729 - 33310775
Alignment:
| Q |
20 |
tatggcaggagcacgcattttcaagctgcattccgaggaagatgttc |
66 |
Q |
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| T |
33310729 |
tatggtaggagcacgcattttcaagctgcattccgaggaagatgttc |
33310775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 8675764 - 8675814
Alignment:
| Q |
16 |
gacatatggcaggagcacgcattttcaagctgcattccgaggaagatgttc |
66 |
Q |
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| T |
8675764 |
gacatgtggcagaagcacacgttttcaagctgcattccaaggaagatgttc |
8675814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 31315695 - 31315649
Alignment:
| Q |
16 |
gacatatggcaggagcacgcattttcaagctgcattccgaggaagat |
62 |
Q |
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| T |
31315695 |
gacatgtggcaggagcacacattttcaagttgcattccaaggaagat |
31315649 |
T |
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