View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_45 (Length: 250)
Name: NF9427_low_45
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39779681 - 39779447
Alignment:
| Q |
1 |
cagaggcctatctgaccattgcccagtctcattaccatcgatgaggagaattgaggtcctagtcctcaatgtatgtggaaatattgggcggatcttctag |
100 |
Q |
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| T |
39779681 |
cagaggactatctgaccattgcccagtctcattaccatcgatgaggagaattgaggtcgtcgtcctcaatgtatgttgaaatattgggcggatcttctag |
39779582 |
T |
|
| Q |
101 |
gttataagaaatttgttcaaaaacaatggcactctcatacgtggatggttggggagaatttgtactaaaggaaaaactcaaaaagattaaaggtagtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779581 |
gttataagaaatttgttcaaaaacaatggcactctcatacgtggatggttggggagaatttgtactaaaggaaaaactcaaaaagattaaaggtagtttg |
39779482 |
T |
|
| Q |
201 |
agaacttggaaccaagatcacaattaaaatcttga |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39779481 |
agaacttggaaccaagatcacaattaaaatcttga |
39779447 |
T |
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