View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_46 (Length: 241)
Name: NF9427_low_46
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5543534 - 5543756
Alignment:
| Q |
1 |
ccctaacgatggccacagaattttttcgcttttgctaacaaatacacactaaaaagatgtggtgaactgggttcgaactcatgacttcacataaaatgtc |
100 |
Q |
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| T |
5543534 |
ccctaacaatggccacagaatttt-tcgcttttgctaacaaatacacactaaaaagatgtggtgaactgggttcgaactcatgacttcacataaaatgtc |
5543632 |
T |
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| Q |
101 |
ttcacaaccaaatccctaggatgcatgaaatcgcaattacaattgatccttttccaccacattttgaacagcatgaaagaacaaaacttttcctcaatct |
200 |
Q |
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| T |
5543633 |
ttcacaaccaaatccctaggatgcatgaaatcgcaattacaattgatccttttccaccacattttgaacagcatgaaagaacaaaacttttcctcaatct |
5543732 |
T |
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| Q |
201 |
cataacaaacactaaggtgcacat |
224 |
Q |
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| T |
5543733 |
cataacaaacactaaggtgcacat |
5543756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 5548580 - 5548517
Alignment:
| Q |
148 |
ccttttccaccacattttgaacagcatgaaagaacaaaacttttcctcaatctcataacaaaca |
211 |
Q |
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|||||||||||||||||| |||| ||||||||| |||||||| | |||||||||||||||||| |
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| T |
5548580 |
ccttttccaccacattttcaacaacatgaaagatcaaaacttcacatcaatctcataacaaaca |
5548517 |
T |
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