View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_47 (Length: 240)
Name: NF9427_low_47
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43281516 - 43281734
Alignment:
| Q |
1 |
cactttacatttagccttttaacttataccctaaaagcacaagttaacatttttccttatttatttatattatacatctacctgtaagtgtttaactgtt |
100 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43281516 |
cactttacatttagccttttaacttatgccctaagagcacaagttaacatttttccttat----ttatattatacatctacctgtaagtgtttaactgtt |
43281611 |
T |
|
| Q |
101 |
aatgctagcaaaatttagcttatgtgaaacactttagcgtataaataccagtcttgtacttgtagttccnnnnnnnntcctttgttaattaaaagtcaac |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43281612 |
aatgctagcaaaacttagcttatgtgaaacactttagcgtataaataccagtcttgtacttgtagttccaaaaaaaatcctttgttaattaaaagtcaac |
43281711 |
T |
|
| Q |
201 |
tttcgaattaaagagcatgtgtg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
43281712 |
tttcgaattaaagagcatgtgtg |
43281734 |
T |
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