View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_49 (Length: 239)
Name: NF9427_low_49
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 35360912 - 35360707
Alignment:
| Q |
18 |
aacattatacatggaaaatgtttagattagaaactttggtgaaaatttgccttgtattcatgcaaaacaaacttcgtcaaagttgaggaatgtatatcga |
117 |
Q |
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| T |
35360912 |
aacattatacatggaaaatgtttagattagaaactttggtgaaaatttgccttgtattcatgcaaaacaaacttcgtcaaagttgaggaatgtatatcga |
35360813 |
T |
|
| Q |
118 |
taatgtaaacccatttgtcacaattggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgcta |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35360812 |
taatgtaaacccatttgtcacacttggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgcta |
35360713 |
T |
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| Q |
218 |
agtata |
223 |
Q |
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|||||| |
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| T |
35360712 |
agtata |
35360707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 35373194 - 35373076
Alignment:
| Q |
105 |
gaatgtatatcgataatgtaaacccatttgtcacaattggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaac |
204 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373194 |
gaatgtatatcaataatgtaaacccatttgtcacacttggttaatttgtgaggatattcttcagaggttggaaaccatgacgaatacttgcttcccaaac |
35373095 |
T |
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| Q |
205 |
tttctcaatgctaagtata |
223 |
Q |
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||||||| ||||||||||| |
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| T |
35373094 |
tttctcagtgctaagtata |
35373076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 35383140 - 35383079
Alignment:
| Q |
162 |
tcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtata |
223 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35383140 |
tctttagaggttggaaaccatgacgaatacttgcttcccaaactttctcagtgctaagtata |
35383079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 19625613 - 19625650
Alignment:
| Q |
177 |
aaccatgacgaatacttgcttcccaaactttctcaatg |
214 |
Q |
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| T |
19625613 |
aaccatgacgaatacttgcttcccatactttctcaatg |
19625650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 19691260 - 19691220
Alignment:
| Q |
174 |
ggaaaccatgacgaatacttgcttcccaaactttctcaatg |
214 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||| |
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| T |
19691260 |
ggaaaccatggcgaatacttgcttcccatactttctcaatg |
19691220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 19701845 - 19701805
Alignment:
| Q |
174 |
ggaaaccatgacgaatacttgcttcccaaactttctcaatg |
214 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||| |
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| T |
19701845 |
ggaaaccatggcgaatacttgcttcccatactttctcaatg |
19701805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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