View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_54 (Length: 233)
Name: NF9427_low_54
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_54 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 34451380 - 34451160
Alignment:
| Q |
13 |
atactaattttctcatcgaaatcaacataattaataannnnnnnaaaaaacgtgaacaaactattattttgagatgaaaagagtattgtctgcttggaaa |
112 |
Q |
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| T |
34451380 |
atactaattttctcatcgaaatcaacataattaataattttttttaaaaacgtgaacaaactattattttgagatgaaaagagcattgtctgcttggaaa |
34451281 |
T |
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| Q |
113 |
tgttccattgcttgtgactattattaaatgcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcgat |
212 |
Q |
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| T |
34451280 |
tgttccattccttgtgactattattaaatgcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaat |
34451181 |
T |
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| Q |
213 |
cttcaagcaatgatatttcac |
233 |
Q |
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| T |
34451180 |
cttcaagcaatgatatttcac |
34451160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 34462023 - 34461937
Alignment:
| Q |
142 |
gcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcgatcttcaagcaatgatat |
228 |
Q |
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| T |
34462023 |
gcaggaaatcgatgacaatatgatgcaacaagtacaaatgcaaaaagaggaagtgaagaaacttttactatcttcaaggaatgatat |
34461937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 34488053 - 34487959
Alignment:
| Q |
133 |
ttattaaatgcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcgatcttcaagcaatgata |
227 |
Q |
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| T |
34488053 |
ttattaattgcaggaaatcaatggcaatatgaagcaacaagtagaaatggaaaaagatgaagtgaagaagatgtttctattttcaaggaatgata |
34487959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 34475773 - 34475712
Alignment:
| Q |
160 |
tatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcgatcttcaagca |
221 |
Q |
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| T |
34475773 |
tatgaagaaacaagcacaaatgcaaaaagaggatgttaggaagatttttcaatcttcaagca |
34475712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 1595373 - 1595326
Alignment:
| Q |
176 |
caaatgcaaaaggaggaagtgaggaagatttttcgatcttcaagcaat |
223 |
Q |
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| T |
1595373 |
caaatacaaaaagaggaagtgaggaagatttttcaatcttcaagcaat |
1595326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 12151244 - 12151280
Alignment:
| Q |
13 |
atactaattttctcatcgaaatcaacataattaataa |
49 |
Q |
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| T |
12151244 |
atactaattttatcattgaaatcaacataattaataa |
12151280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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