View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9427_low_60 (Length: 226)
Name: NF9427_low_60
Description: NF9427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9427_low_60 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43281478 - 43281239
Alignment:
| Q |
1 |
ttcatatctgtctgttgacaatggattaattatgttaatatgattac-------taac-------attttctactaacattttctcctaaatatatcaaa |
86 |
Q |
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| T |
43281478 |
ttcatatttgtctgttgacaatggattaattatgttaatatgattaccatggagtaaccatgctaatttgctactaacattttctcctaaatacatcaac |
43281379 |
T |
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| Q |
87 |
ttttgttgatccatttttatagtatattatttgagtcggagtagaatatacaatcaatattaattaattgtgtatcatgtgtgtgtggaagaattccatg |
186 |
Q |
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| T |
43281378 |
ttttgttgatccatttttatagtatattatttgagacggagtagaatatacaatcaatattaattaattgtgtatcatgtgtgtgtggaagaattccatg |
43281279 |
T |
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| Q |
187 |
ctctttctcacatgcttcctgcatatagttgcaggggctt |
226 |
Q |
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| T |
43281278 |
ctctttctcacatgcttcctgcatatagttgcaggggctt |
43281239 |
T |
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