View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_high_4 (Length: 230)
Name: NF9428_high_4
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 49919817 - 49920040
Alignment:
| Q |
7 |
ataatctgataattattatttatattgtcaggttttccctgaatcactagatggggtgccatttaccagtccagcagtatgttatgttaattcaaatgtt |
106 |
Q |
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| T |
49919817 |
ataatctgataattattatttatattgtcaggttttccctgaatcactagatggggtgccatttaccagtccagcagtatgttatgttaattcaaatgtt |
49919916 |
T |
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| Q |
107 |
acatttgtagctattttcccattcataaattaagtaaattgattttcctgctggttagaattaattgtaagatattatggnnnnnnnagtttgatgatat |
206 |
Q |
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| T |
49919917 |
acatttgtagctattttcctattcataaattaagtaaattgattttcctgctggttagaattaattgtaagatatgatggtttttttagtttgatgatat |
49920016 |
T |
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| Q |
207 |
tgtggtttcttcgctgcaggtcct |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
49920017 |
tgtggtttcttcgctgcaggtcct |
49920040 |
T |
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