View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_10 (Length: 404)
Name: NF9428_low_10
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 27326886 - 27327232
Alignment:
| Q |
18 |
caatccttgttattattaactaactctctcttgttctaacaaattaaccactaatggtttgatttatgattaattactgaagctaatcaatcatggtgtg |
117 |
Q |
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| T |
27326886 |
caatccttgttattattaactaactctctcttgttctaacaaattaaccactaatggtttgttttatgattaattactgaagctaatcaatcatggggta |
27326985 |
T |
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| Q |
118 |
tcggagacgctgagggatgaggttttaagaacaagccaatgctttttcgatctgccaagtgaagnnnnnnnggagtacataagtgaaaagctatttgatc |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27326986 |
tctgagacgctgagggatgaggttttaagaacaagccaatgctttttcgatctgccaagtgaagaaaaaaaggagtacataagtgaaaagctatttgatc |
27327085 |
T |
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| Q |
218 |
caattagatgtggtacaagctttaatttgaaggtagacaaaaccctctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27327086 |
caattagatgtggtacaagctttaatttgaaggtagacaaaaccctctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttc |
27327185 |
T |
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| Q |
318 |
caagccccctgggtttaggtatatcattcttcttgcacttttattac |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27327186 |
caagccccctgggtttaggtatatcattcttcttgcacttttattac |
27327232 |
T |
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