View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9428_low_11 (Length: 400)

Name: NF9428_low_11
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9428_low_11
NF9428_low_11
[»] scaffold0246 (4 HSPs)
scaffold0246 (71-159)||(18774-18862)
scaffold0246 (68-135)||(3550-3617)
scaffold0246 (208-392)||(19092-19276)
scaffold0246 (209-249)||(4429-4469)
[»] chr4 (5 HSPs)
chr4 (71-159)||(40480835-40480923)
chr4 (208-392)||(40481153-40481337)
chr4 (70-141)||(25112204-25112275)
chr4 (224-310)||(25240869-25240955)
chr4 (77-141)||(25241220-25241284)
[»] chr6 (2 HSPs)
chr6 (70-137)||(17116624-17116691)
chr6 (70-141)||(17126058-17126129)
[»] scaffold0250 (1 HSPs)
scaffold0250 (73-141)||(17387-17455)
[»] scaffold0011 (2 HSPs)
scaffold0011 (70-141)||(185517-185588)
scaffold0011 (72-141)||(223396-223465)


Alignment Details
Target: scaffold0246 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 18774 - 18862
Alignment:
Q  71 gatgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttcgccaatctgtacaataat 159  Q
    |||||||||||||| ||||||||||||||||| ||  | |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  18774 gatgacataaactttaatgctgccatgcgtagattacgaacgagttcttttatggtcaagttgtagccttcaccaatctgtacaataat 18862  T

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Target: scaffold0246; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 3550 - 3617
Alignment:
Q  68 tttgatgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgta 135  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||    
T  3550 tttgatgacataaacttcaatgctgccatgtgtaggttcttgacaagttcctttatgctcaagttgta 3617  T

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Target: scaffold0246; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 392
Target Start/End: Original strand, 19092 - 19276
Alignment:
Q  208 taaaaagaatatcctttacctcagcaatgatggtaatgtcaacgatagaatccccaagagccataacattgttattgacgacaaatagttgataattttg 307  Q
    |||| |||||||||||||||||||||||||  ||||||||   || |||||| |||| ||| | || |  ||||||||| || ||||||||| || ||||    
T  19092 taaagagaatatcctttacctcagcaatgactgtaatgtcgtggaaagaatctccaaaagctaaaatacggttattgacaactaatagttgaaaactttg 19191  T
Q  308 aatctcagtaacgattttaacaagaaatccgttatgattttggcattggatccgaatcaagatatgtttcccagacacctttgct 392  Q
     ||||| || |  | ||||||||||| ||| | ||| |||||||| |||||||||||||| || | |||||| ||||| ||||||    
T  19192 tatctctgtgattactttaacaagaagtccatcatgtttttggcaatggatccgaatcaacatctttttcccggacacttttgct 19276  T

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Target: scaffold0246; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 4429 - 4469
Alignment:
Q  209 aaaaagaatatcctttacctcagcaatgatggtaatgtcaa 249  Q
    ||||||| | |||||||||||||||||||| ||||||||||    
T  4429 aaaaagattgtcctttacctcagcaatgatagtaatgtcaa 4469  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 40480835 - 40480923
Alignment:
Q  71 gatgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttcgccaatctgtacaataat 159  Q
    |||||||||||||| ||||||||||||||||| ||  | |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  40480835 gatgacataaactttaatgctgccatgcgtagattacgaacgagttcttttatggtcaagttgtagccttcaccaatctgtacaataat 40480923  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 392
Target Start/End: Original strand, 40481153 - 40481337
Alignment:
Q  208 taaaaagaatatcctttacctcagcaatgatggtaatgtcaacgatagaatccccaagagccataacattgttattgacgacaaatagttgataattttg 307  Q
    |||| |||||||||||||||||||||||||  ||||||||   || |||||| |||| ||| | || |  ||||||||| || ||||||||| || ||||    
T  40481153 taaagagaatatcctttacctcagcaatgactgtaatgtcgtggaaagaatctccaaaagctaaaatacggttattgacaactaatagttgaaaactttg 40481252  T
Q  308 aatctcagtaacgattttaacaagaaatccgttatgattttggcattggatccgaatcaagatatgtttcccagacacctttgct 392  Q
     ||||| || |  | ||||||||||| ||| | ||| |||||||| |||||||||||||| || | |||||| ||||| ||||||    
T  40481253 tatctctgtgattactttaacaagaagtccatcatgtttttggcaatggatccgaatcaacatctttttcccggacacttttgct 40481337  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 25112204 - 25112275
Alignment:
Q  70 tgatgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttc 141  Q
    ||||||| |||||||||||  ||||||||||| |||||  || |||||||||||| |||||||||| |||||    
T  25112204 tgatgacgtaaacttcaataatgccatgcgtacgttcttcacaagttcctttatgctcaagttgtacccttc 25112275  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 25240955 - 25240869
Alignment:
Q  224 tacctcagcaatgatggtaatgtcaacgatagaatccccaagagccataacattgttattgacgacaaatagttgataattttgaat 310  Q
    ||||| |||||||||||||||||| |  |||||||| ||||  |  || ||| || ||||||| |||||||||||||| ||||||||    
T  25240955 tacctgagcaatgatggtaatgtcgagtatagaatctccaaagggtatgacactgctattgacaacaaatagttgatatttttgaat 25240869  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 25241284 - 25241220
Alignment:
Q  77 ataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttc 141  Q
    ||||||||||||  ||||||||||| |||||  || |||||||||||| ||| |||||| |||||    
T  25241284 ataaacttcaatagtgccatgcgtacgttcttcacaagttcctttatgctcaggttgtacccttc 25241220  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 17116691 - 17116624
Alignment:
Q  70 tgatgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagc 137  Q
    ||||||||||||||||||||||||||||||||||||||  || |||||||||||| ||| ||||||||    
T  17116691 tgatgacataaacttcaatgctgccatgcgtaggttcttcacaagttcctttatgctcatgttgtagc 17116624  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 17126129 - 17126058
Alignment:
Q  70 tgatgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttc 141  Q
    |||||||||||||||||||||| |||||||||||||||  || ||||||||||||  || ||||||||||||    
T  17126129 tgatgacataaacttcaatgcttccatgcgtaggttcttcacaagttcctttatgcacatgttgtagccttc 17126058  T

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Target: scaffold0250 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 17455 - 17387
Alignment:
Q  73 tgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttc 141  Q
    |||||||||||||||| ||||||||||||||||||  || |||||||||||| ||| ||||||||||||    
T  17455 tgacataaacttcaatactgccatgcgtaggttcttcacaagttcctttatgctcatgttgtagccttc 17387  T

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Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 185588 - 185517
Alignment:
Q  70 tgatgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttc 141  Q
    |||||||||||||||||||||| |  |||||| |||||  || |||||||||||| ||||||||||||||||    
T  185588 tgatgacataaacttcaatgcttctttgcgtatgttcttcacaagttcctttatgctcaagttgtagccttc 185517  T

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Target: scaffold0011; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 223465 - 223396
Alignment:
Q  72 atgacataaacttcaatgctgccatgcgtaggttctggacgagttcctttatggtcaagttgtagccttc 141  Q
    |||||||||||||||||||| || |||||| |||||  || |||| ||||||| ||||||||||||||||    
T  223465 atgacataaacttcaatgcttccttgcgtatgttcttcacaagttgctttatgctcaagttgtagccttc 223396  T

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