View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9428_low_12 (Length: 394)
Name: NF9428_low_12
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 47663086 - 47663450
Alignment:
| Q |
20 |
ggagtagctatgtggttaatcaacggtgtcactatggcnnnnnnnncatctttaaatcgttgctcttgcattcgcatcgccactgaagaagacggagaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47663086 |
ggagtagctatgtggttaatcaacggtgtcactatggcttttttttcatctttaaatcgttgctcttgcattcgtatcgccactgaagaagacggagaag |
47663185 |
T |
|
| Q |
120 |
atgccaatgagttgccattgatgttcaacgatggtactctccgccatgacggtaccaccagcaggagaaggactggtaaagggaagaaaagtgtacttgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47663186 |
atgccaatgagttgccattgatgttcaacgatggtactctccgccatgacggtaccaccagcaggagaaggactggtaaagggaagaaaagtgtacttgt |
47663285 |
T |
|
| Q |
220 |
ccacgaacaatgatcaatgtctctttattttcatggtaagtgatatatattataatgttacatatgtgagagtttttctaattgtgcgttcaaatcaaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47663286 |
ccacgaacaatgatcaatgtctctttattttcatggtaagtgatatatattataatgttacatatgtgagagtttttctaattgtgcgttcaaatcaaag |
47663385 |
T |
|
| Q |
320 |
cttatgttatttctggagatgaaaaatgaatatcaattaagatgcttgtaatattctcccctttg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47663386 |
cttatgttatttctggagatgaaaaatgaatatcaattaagatgcttgtaatattctcccctttg |
47663450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University